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Sample GSM1239859 Query DataSets for GSM1239859
Status Public on Sep 26, 2013
Title with IL-11 _replicate 2
Sample type RNA
 
Source name with IL-11 _replicate 2
Organism Homo sapiens
Characteristics cell line: hESC line H1
Treatment protocol bFGF supplement (24ng/ml), IL-11 treatment 10ng/ml.
Growth protocol embryonic stem cells grown on matrigel in N2B27 medium supplemented with cytokines.
Extracted molecule total RNA
Extraction protocol RNA was extracted and DNAseI were performed using the QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with agarose gel.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 2
SAMPLE 6
Data processing The data were normalised using Genome Studio.
 
Submission date Sep 25, 2013
Last update date Sep 26, 2013
Contact name Raed Abu Dawud
E-mail(s) raed.abu-dawud@charite.de
Organization name Berlin-Brandenburg Center for Regenerative Therapies
Department Immunology
Lab Kurtz
Street address Föhrertstr. 15
City Berlin
ZIP/Postal code 13353
Country Germany
 
Platform ID GPL6883
Series (1)
GSE51159 Qualitative modeling identifies IL-11 as a novel regulator in maintaining self-renewal in human pluripotent stem cells

Data table header descriptions
ID_REF
VALUE rank invariant, diff expression, false discovery rate.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -7.885371 0.9190938
ILMN_2055271 18.58827 0.06148867
ILMN_2383229 7.173604 0.2394822
ILMN_1806310 15.54222 0.08414239
ILMN_1779670 7.749665 0.2071197
ILMN_2321282 18.85357 0.05825243
ILMN_1772582 0.456297 0.5501618
ILMN_1717783 6.052538 0.2686084
ILMN_1814316 6.147198 0.2686084
ILMN_2359168 13.46458 0.1067961
ILMN_1731507 -4.325366 0.802589
ILMN_1787689 24.76044 0.03236246
ILMN_1745607 197.4262 0
ILMN_2136495 11.58823 0.1326861
ILMN_1668111 2.293004 0.4466019
ILMN_2295559 -1.301626 0.6407767
ILMN_1735045 64.605 0.006472492
ILMN_1680754 33.4101 0.02588997
ILMN_2375184 4.471782 0.3139158
ILMN_1659452 6.450166 0.2653722

Total number of rows: 24526

Table truncated, full table size 695 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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