|
| Status |
Public on Sep 06, 2013 |
| Title |
Time 5 replicate 1 |
| Sample type |
RNA |
| |
|
| Source name |
Time 5
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: epidermal stem cell
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNAs were prepared with Qiagen Rneasy minikit according to manufacturer’s protocol
|
| Label |
Cy3
|
| Label protocol |
500 ng of total RNA from each sample were amplified by Oligo-dT-T7 reverse transcription and labeled by in vitro transcription with T7 RNA polymerase in the presence of Cy3-CTP using the Quick Amp Labeling kit (Agilent) and purified using RNAeasy columns (Qiagen, Hilden, Germany)
|
| |
|
| Hybridization protocol |
After fragmentation, 1650 ng of labeled cRNA from each sample was hybridized in in situ hybridization oven (Agilent) for 17 h at 65ºC and washed during 1 min at rt in Gene Expression Wash Buffer 1 (Agilent) and 1 min at 37 ºC with Gene Expression Wahs buffer 2 (Agilent).
|
| Scan protocol |
Scanned on an Agilent G2539A scanner at 5um resolution and 100%PMT
The intensity data of each individual hybridization were extracted and the quality was assessed with the Feature Extraction software 10.7 (Agilent).
|
| Data processing |
Raw data was corrected for background noise using the normexp method. Quantile normalization was applied to assure comparability across samples.
|
| |
|
| Submission date |
Sep 05, 2013 |
| Last update date |
Sep 06, 2013 |
| Contact name |
Salvador Aznar Benitah |
| E-mail(s) |
salvador.aznar-benitah@irbbarcelona.org
|
| Phone |
+34 934034021
|
| Organization name |
Institute for Research in Biomedicine (IRB, Barcelona)
|
| Department |
Oncology
|
| Lab |
Stem Cells and Cancer
|
| Street address |
Baldiri Reixac 10
|
| City |
Barcelona |
| ZIP/Postal code |
08028 |
| Country |
Spain |
| |
|
| Platform ID |
GPL10332 |
| Series (1) |
| GSE50631 |
Human epidermal stem cell function is regulated by circadian oscillations |
|
