NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1220571 Query DataSets for GSM1220571
Status Public on Sep 18, 2013
Title Histone H3K9me3 ChIP-Seq of Fetal Spinal Cord; Histone.DS23073
Sample type SRA
 
Source name Fetal Spinal, Cord primary tissue, day 108; Histone.DS23073
Organism Homo sapiens
Characteristics sample alias: fSpinal_Cord.H-24832d108
sample common name: Fetal Spinal Cord
disease: None
biomaterial_provider: University of Washington, Congenital Defects Lab. Ian Glass
biomaterial_type: Primary Tissue
tissue_type: Fetal Spinal Cord
tissue_depot: UW
collection_method: fetal
donor_id: H-24832
donor_age: day 108
donor_health_status: NA
donor_sex: Female
donor_ethnicity: NA
experiment_type: Histone H3K9me3
extraction_protocol: http://www.roadmapepigenomics.org/protocols/type/experimental
extraction_protocol_type_of_sonicator: Diagenode Bioruptor
extraction_protocol_sonication_cycles: 20-40 cycles of 0.5 minute on and 0.5 minute off
chip_protocol: http://www.roadmapepigenomics.org/protocolstype/experimental
chip_protocol_chromatin_amount: 60ug
chip_protocol_bead_type: Millipore A/G agarose beads
chip_protocol_bead_amount: 30ul A/G bead slurry
chip_protocol_antibody_amount: 3ug
chip_antibody: Histone H3K9me3
chip_antibody_provider: Active Motif
chip_antibody_catalog: 39161
chip_antibody_lot: 13509002
Extracted molecule genomic DNA
Extraction protocol Library construction protocol: Single read - Illumina
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description sample_term_id: UBERON_0002240
assay_term_id: OBI_0000716
nucleic_acid_term_id: SO_0000352
Design description: Histone H3K9me3 ChIP-Seq
Library name: Histone.DS23073
EDACC Genboree Experiment Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUniversity%20of%20Washington%2FEXPERIMENT%2FEDACC.18597
EDACC Genboree Sample Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUniversity%20of%20Washington%2FSAMPLE%2FEDACC.18575
****************
For data usage terms and conditions, please refer to:
http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies
****************
Data processing Various levels of processed data files will be made available as this project proceeds.
 
Submission date Aug 30, 2013
Last update date May 15, 2019
Contact name Northwest REMC
E-mail(s) rharris1@bcm.tmc.edu
Organization name University of Washington
Street address -
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL11154
Series (1)
GSE18927 University of Washington Human Reference Epigenome Mapping Project
Relations
SRA SRX342319
BioSample SAMN02340050

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap