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Sample GSM1215446 Query DataSets for GSM1215446
Status Public on Feb 26, 2014
Title Coronary_artery_SJ600-5
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Coronary_artery
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.300820046
cg00000108 0.9249636
cg00000109 0.673095636
cg00000165 0.196943603
cg00000236 0.815344266
cg00000289 0.730809317
cg00000292 0.646125715
cg00000321 0.351973174
cg00000363 0.254438864
cg00000622 0.006030584
cg00000658 0.814549875
cg00000714 0.138955649
cg00000721 0.854270879
cg00000734 0.081852268
cg00000769 0.066291585
cg00000807 0.714020463
cg00000884 0.879677648
cg00000905 0.057290989
cg00000924 0.542098599
cg00000948 0.88032364

Total number of rows: 485577

Table truncated, full table size 10776 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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