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GEO accession:
Sample GSM12075
Query DataSets for GSM12075
Status
Public on Nov 25, 2003
Title
N001 Normal Human Kidney U133A
Sample type
RNA
Source name
Trizol isolation of total RNA from normal tissue adjacent to Renal Cell Carcinoma
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Age = 58; Gender = Male; Left Kidney; Tumor Type = clear cell; Adjacent Tumor Fuhrman Grade = 1; Adjacent Tumor Capsule Penetration = true; Adjacent Tumor Perinephric Fat Invasion = false; Adjacent Tumor Renal Sinus Invasion = false; Adjacent Tumor Renal Vein Invasion = false; Tumor Location: mid; Scaling Target = 500; Scaling Factor = 9.94; Raw Q = 2.44; Noise = 2.47; Background = 55.43.
Keywords = kidney
Keywords = renal
Keywords = RCC
Keywords = carcinoma
Keywords = cancer
Lot batch = 2004076
Submission date
Oct 22, 2003
Last update date
May 28, 2005
Contact name
Marc E. Lenburg
E-mail(s)
mlenburg@bu.edu
Phone
617-414-1375
Fax
617-414-1646
URL
http://gg.bu.edu
Organization name
Boston University School of Medicine
Department
Genetics and Genomics
Street address
715 Albany Street, E613B
City
Boston
State/province
MA
ZIP/Postal code
02130
Country
USA
Platform ID
GPL96
Series (1)
GSE781
Normal and Renal Cell Carcinoma Kidney Tissue, Human
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Statistical Algorithm (mean scaled to 500)
ABS_CALL
MAS 5.0 Absent, Marginal, Present call with Alpha1 = 0.05, Alpha2 = 0.065
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
1146
P
AFFX-BioB-M_at
2232.6
P
AFFX-BioB-3_at
1148.5
P
AFFX-BioC-5_at
2460
P
AFFX-BioC-3_at
1856.3
P
AFFX-BioDn-5_at
2347.7
P
AFFX-BioDn-3_at
14334.1
P
AFFX-CreX-5_at
25877.6
P
AFFX-CreX-3_at
35092.1
P
AFFX-DapX-5_at
29.4
A
AFFX-DapX-M_at
69.1
A
AFFX-DapX-3_at
12.1
A
AFFX-LysX-5_at
70.8
A
AFFX-LysX-M_at
21.2
A
AFFX-LysX-3_at
26.6
A
AFFX-PheX-5_at
5.1
A
AFFX-PheX-M_at
5.4
A
AFFX-PheX-3_at
62.8
A
AFFX-ThrX-5_at
15.9
A
AFFX-ThrX-M_at
15.7
A
Total number of rows:
22283
Table truncated, full table size
403 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM12075.CEL.gz
3.2 Mb
(ftp)
(http)
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