NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM119976 Query DataSets for GSM119976
Status Public on Jul 13, 2006
Title A NUH.BT114
Sample type RNA
 
Source name Breast Tumor
Organism Homo sapiens
Characteristics NUH-sample ID: NT01-16
grade: Grade2
Probability 1-like (by SWS classifier): 0.959
Probability 3-like (by SWS classifier): 0.041
Genetic grade signature status prediction (by SWS classifier): 2a
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Series of 40 tumours
Data processing Affymetrix Microarray Suite Version 5.0
 
Submission date Jul 12, 2006
Last update date Mar 18, 2013
Contact name Lance David Miller
E-mail(s) millerl@gis.a-star.edu.sg
Phone 65 6478 8100
Fax 65 6478 9060
URL http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
Organization name Genome Institute of Singapore
Department Microarray and Expression Genomics
Street address 60 Bioplois Street, #02-01 Genome
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL96
Series (1)
GSE4922 Genetic Reclassification of Histologic Grade Delineates New Clinical Subtypes of Breast Cancer
Relations
Reanalyzed by GSM1100073

Data table header descriptions
ID_REF Affy ID
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
P-VALUE the p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL P-VALUE
212223_at 7.45819752146378 P 0.00630784729378275
204339_s_at 5.74290404413348 A 0.70350996100991
212356_at 6.97994547383231 A 0.163553459180572
212489_at 7.26278628369681 P 0.00807846014944036
208850_s_at 7.32083406589278 P 0.00164179881927007
208973_at 5.95516532229354 A 0.0907246701401557
210122_at 2.6072458430601 A 0.945595285688441
208174_x_at 7.5294423165623 P 0.0048898452144488
210255_at 5.92774313451646 P 0.0306843519290675
210388_at 4.54726158386935 A 0.857475258508
207430_s_at 4.98181652543251 A 0.0649520508151722
206872_at 6.30594671747605 A 0.163553459180572
207624_s_at 5.6207206134823 P 0.0306843519290675
213315_x_at 7.2710210678526 P 0.0250027490383783
219856_at 4.22985231258777 A 0.605365909820045
213509_x_at 8.07179472206698 A 0.0770218236345017
207818_s_at 2.66453786742548 A 0.81350078627961
200656_s_at 8.6634201439614 P 0.00164179881927007
217622_at 6.59912257065916 A 0.0907246701401557
204916_at 6.19561303152185 P 0.0373956404974136

Total number of rows: 22283

Table truncated, full table size 1054 Kbytes.




Supplementary file Size Download File type/resource
GSM119976.CEL.gz 3.4 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap