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Sample GSM119957 Query DataSets for GSM119957
Status Public on Jul 13, 2006
Title A NUH.BT070
Sample type RNA
 
Source name Breast Tumor
Organism Homo sapiens
Characteristics NUH-sample ID: NT00-226
grade: Grade2
Probability 1-like (by SWS classifier): 0.894
Probability 3-like (by SWS classifier): 0.106
Genetic grade signature status prediction (by SWS classifier): 2a
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Series of 40 tumours
Data processing Affymetrix Microarray Suite Version 5.0
 
Submission date Jul 12, 2006
Last update date Mar 18, 2013
Contact name Lance David Miller
E-mail(s) millerl@gis.a-star.edu.sg
Phone 65 6478 8100
Fax 65 6478 9060
URL http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
Organization name Genome Institute of Singapore
Department Microarray and Expression Genomics
Street address 60 Bioplois Street, #02-01 Genome
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL96
Series (1)
GSE4922 Genetic Reclassification of Histologic Grade Delineates New Clinical Subtypes of Breast Cancer
Relations
Reanalyzed by GSM1100055

Data table header descriptions
ID_REF Affy ID
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
P-VALUE the p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL P-VALUE
212223_at 7.9445402509068 P 0.00807846014944036
204339_s_at 6.6594479641343 A 0.429293126207525
212356_at 7.22962450044181 A 0.142524741492000
212489_at 7.39195656475335 P 0.00630784729378275
208850_s_at 7.16841695500776 P 0.00376320319539847
208973_at 6.84706211163953 P 0.00630784729378275
210122_at 2.71774971387979 A 0.922978176365498
208174_x_at 7.41434819454012 P 0.0048898452144488
210255_at 5.46516761317076 P 0.0250027490383783
210388_at 4.6358643972794 A 0.836446540819428
207430_s_at 4.88250397727329 A 0.211338982947455
206872_at 5.53440522262683 A 0.464506310393464
207624_s_at 5.74888887343408 P 0.00807846014944036
213315_x_at 7.69650451377892 P 0.00630784729378275
219856_at 2.94033865293547 A 0.95473940454311
213509_x_at 7.76752589672743 A 0.0907246701401557
207818_s_at 2.22818468861968 A 0.81350078627961
200656_s_at 8.51195582394873 P 0.00164179881927007
217622_at 6.28529004546831 A 0.142524741492000
204916_at 6.72290260835488 P 0.0250027490383783

Total number of rows: 22283

Table truncated, full table size 1055 Kbytes.




Supplementary file Size Download File type/resource
GSM119957.CEL.gz 3.3 Mb (ftp)(http) CEL

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