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Sample GSM119956 Query DataSets for GSM119956
Status Public on Jul 13, 2006
Title A NUH.BT068
Sample type RNA
 
Source name Breast Tumor
Organism Homo sapiens
Characteristics NUH-sample ID: NT00-219
grade: Grade2
Probability 1-like (by SWS classifier): 0.894
Probability 3-like (by SWS classifier): 0.106
Genetic grade signature status prediction (by SWS classifier): 2a
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Series of 40 tumours
Data processing Affymetrix Microarray Suite Version 5.0
 
Submission date Jul 12, 2006
Last update date Mar 18, 2013
Contact name Lance David Miller
E-mail(s) millerl@gis.a-star.edu.sg
Phone 65 6478 8100
Fax 65 6478 9060
URL http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
Organization name Genome Institute of Singapore
Department Microarray and Expression Genomics
Street address 60 Bioplois Street, #02-01 Genome
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL96
Series (1)
GSE4922 Genetic Reclassification of Histologic Grade Delineates New Clinical Subtypes of Breast Cancer
Relations
Reanalyzed by GSM1100054

Data table header descriptions
ID_REF Affy ID
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
P-VALUE the p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL P-VALUE
212223_at 7.97398669242329 P 0.00376320319539847
204339_s_at 6.42534443889154 A 0.429293126207525
212356_at 7.06542158677289 A 0.142524741492000
212489_at 8.14918928316476 P 0.00164179881927007
208850_s_at 8.1220914954576 P 0.00164179881927007
208973_at 6.67002144610356 P 0.00287512549712787
210122_at 2.07748268235752 A 0.893841349203427
208174_x_at 7.28885090556249 P 0.00630784729378275
210255_at 5.99411384591946 P 0.00807846014944036
210388_at 4.49481867539216 A 0.893841349203427
207430_s_at 5.34189333842758 A 0.123405137319250
206872_at 5.70275917522553 A 0.328002605084262
207624_s_at 5.78895511755637 P 0.0129676797672666
213315_x_at 7.90309445866205 P 0.00218062581216094
219856_at 3.11470508418779 A 0.671997394915738
213509_x_at 7.9450296740694 A 0.0770218236345017
207818_s_at 1.44656066058508 A 0.857475258508
200656_s_at 8.56758343739099 P 0.00164179881927007
217622_at 6.460147967041 A 0.106158650796573
204916_at 6.6059983449606 P 0.0162546647184098

Total number of rows: 22283

Table truncated, full table size 1058 Kbytes.




Supplementary file Size Download File type/resource
GSM119956.CEL.gz 3.4 Mb (ftp)(http) CEL

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