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Sample GSM119954 Query DataSets for GSM119954
Status Public on Jul 13, 2006
Title A NUH.BT061
Sample type RNA
 
Source name Breast Tumor
Organism Homo sapiens
Characteristics NUH-sample ID: NT00-128
grade: Grade2
Probability 1-like (by SWS classifier): 0.003
Probability 3-like (by SWS classifier): 0.997
Genetic grade signature status prediction (by SWS classifier): 2b
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Series of 40 tumours
Data processing Affymetrix Microarray Suite Version 5.0
 
Submission date Jul 12, 2006
Last update date Mar 18, 2013
Contact name Lance David Miller
E-mail(s) millerl@gis.a-star.edu.sg
Phone 65 6478 8100
Fax 65 6478 9060
URL http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
Organization name Genome Institute of Singapore
Department Microarray and Expression Genomics
Street address 60 Bioplois Street, #02-01 Genome
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL96
Series (1)
GSE4922 Genetic Reclassification of Histologic Grade Delineates New Clinical Subtypes of Breast Cancer
Relations
Reanalyzed by GSM1100052

Data table header descriptions
ID_REF Affy ID
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
P-VALUE the p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL P-VALUE
212223_at 7.96950963864564 P 0.00287512549712787
204339_s_at 5.94669493638353 A 0.671997394915738
212356_at 6.9896627482815 M 0.0544047143115589
212489_at 7.50775446369338 P 0.00287512549712787
208850_s_at 7.6244807513778 P 0.00164179881927007
208973_at 6.54636431480276 P 0.00376320319539847
210122_at 2.50324589060840 A 0.893841349203427
208174_x_at 7.75685626950054 P 0.00287512549712787
210255_at 5.08368494433108 P 0.0202308511531004
210388_at 4.24209186555787 A 0.87659486268075
207430_s_at 5.26064085873876 A 0.0649520508151722
206872_at 5.37653517724985 A 0.394634090179955
207624_s_at 6.33285247250953 P 0.00807846014944036
213315_x_at 8.08561219272045 P 0.00376320319539847
219856_at 2.66099905634082 A 0.909275329859844
213509_x_at 7.69215497437679 A 0.238016683680144
207818_s_at 2.03050798558436 A 0.788661017052545
200656_s_at 8.74922391717556 P 0.00164179881927007
217622_at 6.6247174247718 P 0.0373956404974136
204916_at 7.02587279848802 P 0.00376320319539847

Total number of rows: 22283

Table truncated, full table size 1058 Kbytes.




Supplementary file Size Download File type/resource
GSM119954.CEL.gz 3.5 Mb (ftp)(http) CEL

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