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Sample GSM1194276 Query DataSets for GSM1194276
Status Public on Oct 08, 2016
Title HOP-92
Sample type genomic
 
Source name Lung
Organism Homo sapiens
Characteristics tissue: Lung
cell line: HOP-92
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
HOP-92.Detection Pval
HOP-92.Signal_A
HOP-92.Signal_B

Data table
ID_REF VALUE HOP-92.Detection Pval HOP-92.Signal_A HOP-92.Signal_B
cg00000029 0.04354108 0.00 4036.927 188.3262
cg00000108 0.9354256 0.00 319.3603 6074.865
cg00000109 0.9181735 0.00 238.4082 3797.271
cg00000165 0.6290703 0.00 1278.331 2337.551
cg00000236 0.8705314 0.00 198.377 2006.25
cg00000289 0.7381891 0.00 491.0498 1666.495
cg00000292 0.7823679 0.00 1949.076 7366.245
cg00000321 0.8695164 0.00 564.8852 4430.662
cg00000363 0.4658479 0.00 7702.899 6805.109
cg00000622 0.0120486 0.00 15291.04 187.702
cg00000658 0.8460176 0.00 1343.27 7929.686
cg00000714 0.2829278 0.00 16391.46 6506.862
cg00000721 0.9207121 0.00 227.7332 3805.727
cg00000734 0.07038803 0.00 10924.97 834.7847
cg00000769 0.07572099 0.00 9451.669 782.5146
cg00000807 0.9005021 0.00 1365.51 13263.54
cg00000884 0.7985782 0.00 485.7123 2322.177
cg00000905 0.08937924 0.00 2554.882 260.582
cg00000924 0.4222325 0.00 7722.47 5716.661
cg00000948 0.8881776 0.00 1221.397 10495.53

Total number of rows: 485577

Table truncated, full table size 20847 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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