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Sample GSM1194235 Query DataSets for GSM1194235
Status Public on Oct 08, 2016
Title NCI-H23
Sample type genomic
 
Source name Lung
Organism Homo sapiens
Characteristics tissue: Lung
cell line: NCI-H23
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
NCI-H23.Detection Pval
NCI-H23.Signal_A
NCI-H23.Signal_B

Data table
ID_REF VALUE NCI-H23.Detection Pval NCI-H23.Signal_A NCI-H23.Signal_B
cg00000029 0.3047553 0.00 3548.066 1599.102
cg00000108 0.9199566 0.00 417.4195 5946.817
cg00000109 0.7756472 0.00 746.5787 2926.847
cg00000165 0.8555636 0.00 527.4854 3716.886
cg00000236 0.8558803 0.00 510.8716 3627.769
cg00000289 0.6249284 0.00 661.4334 1268.668
cg00000292 0.8331757 0.00 1845.16 9714.771
cg00000321 0.436637 0.00 6075.427 4786.292
cg00000363 0.6489987 0.00 4797.209 9054.902
cg00000622 0.01006802 0.00 15418.56 157.8303
cg00000658 0.827161 0.00 1838.93 9279.197
cg00000714 0.1409795 0.00 15220.24 2514.305
cg00000721 0.9052948 0.00 388.3455 4668.136
cg00000734 0.0768994 0.00 12160.2 1021.343
cg00000769 0.07814183 0.00 10744.12 919.2083
cg00000807 0.8104747 0.00 3173.219 13997.4
cg00000884 0.7264577 0.00 984.3624 2879.785
cg00000905 0.07506414 0.00 4169.003 346.4554
cg00000924 0.8913547 0.00 1224.223 10864.28
cg00000948 0.8055481 0.00 2794.219 11989.76

Total number of rows: 485577

Table truncated, full table size 20860 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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