|
| Status |
Public on Aug 06, 2013 |
| Title |
Saliva_PT3 |
| Sample type |
genomic |
| |
|
| Source name |
Healthy individuals
|
| Organism |
Homo sapiens |
| Characteristics |
dataset: Data set 2
tissue: saliva
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Saliva:Oragene Discover kits (OGR-250, DNA Genotek Inc.);Blood:Qiagen mini kits; Buccal:chlorophorm/isoamylalcohol protocol;internal tissues:chlorophorm/isoamylalcohol protocol
|
| Label |
biotin
|
| Label protocol |
According to Illumina protocol
|
| |
|
| Hybridization protocol |
According to Illumina protocol
|
| Scan protocol |
According to Illumina protocol
|
| Data processing |
The distributions of the six different signals on the 450k array (Type I (red/green and methylated/unmethylated) and Type II (red/green)) were quantile normalized separately.
|
| |
|
| Submission date |
Jul 02, 2013 |
| Last update date |
Aug 06, 2013 |
| Contact name |
Roderick Slieker |
| E-mail(s) |
r.c.slieker@lumc.nl
|
| Organization name |
Leiden University Medical Center
|
| Department |
Molecular Cell Biology
|
| Street address |
PO Box 9600
|
| City |
Leiden |
| ZIP/Postal code |
2333RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE48472 |
Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array |
|
