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Sample GSM1179520 Query DataSets for GSM1179520
Status Public on Aug 06, 2013
Title Pancreas_IT13
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics dataset: Data set 1
tissue: pancreas
Extracted molecule genomic DNA
Extraction protocol Saliva:Oragene Discover kits (OGR-250, DNA Genotek Inc.);Blood:Qiagen mini kits; Buccal:chlorophorm/isoamylalcohol protocol;internal tissues:chlorophorm/isoamylalcohol protocol
Label biotin
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The distributions of the six different signals on the 450k array (Type I (red/green and methylated/unmethylated) and Type II (red/green)) were quantile normalized separately.
Submission date Jul 02, 2013
Last update date Aug 06, 2013
Contact name Roderick Slieker
Organization name Leiden University Medical Center
Department Molecular Cell Biology
Street address PO Box 9600
City Leiden
ZIP/Postal code 2333RC
Country Netherlands
Platform ID GPL13534
Series (1)
GSE48472 Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array

Data table header descriptions
VALUE quantile normalized
detP 5729917059_R06C02

Data table
ID_REF VALUE detP 5729917059_R06C02
cg00000029 0.222768986 0
cg00000108 0.884193288 0
cg00000109 0.848851069 0
cg00000165 0.197405557 0
cg00000236 0.827511359 0
cg00000289 0.539401088 3.22E-08
cg00000292 0.594723968 0
cg00000321 0.334224285 0
cg00000363 0.174352175 0
cg00000622 0.029715331 0
cg00000658 0.831301107 0
cg00000714 0.231375435 0
cg00000721 0.907890348 0
cg00000734 0.126442348 0
cg00000769 0.065269963 0
cg00000807 0.816334562 0
cg00000884 0.875035405 0
cg00000905 0.128100422 0
cg00000924 0.495466018 0
cg00000948 0.871768205 0

Total number of rows: 485577

Table truncated, full table size 11997 Kbytes.

Supplementary file Size Download File type/resource
GSM1179520_5729917059_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1179520_5729917059_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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