|
| Status |
Public on Jul 01, 2016 |
| Title |
Meq-DF-1, biological rep1/Meq Ab |
| Sample type |
SRA |
| |
|
| Source name |
Meq1_NoIndex_L001_R1_001.fastq
|
| Organism |
Gallus gallus |
| Characteristics |
chip antibody: Meq
cell line: Meq-DF-1 clone 5G
|
| Growth protocol |
Cells were cultured in Lebowitz's L-15 and McCoy 5A media with 15% inactivated fetal bovine serum, 100 U of penicillin per ml, and maintained at 37 °C.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
unknown to submitters/authors of this data
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
ChIP-seq reads were aligned to the chicken genome assembly using Bowtie 0.12.5
ChIP-seq data were analyzed using the peak calling software QUEST
Peaks with high-confidence were defined by ChIP-enrichment of more than three-fold with an FDR <0.01 .
Genome_build: unknown to submitter/authors of this data
|
| |
|
| Submission date |
Jul 01, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
sugalesini Subramaniam |
| E-mail(s) |
subram28@msu.edu
|
| Phone |
5172302659
|
| Organization name |
Michigan State University
|
| Department |
CMIB
|
| Lab |
USDA-ADOL
|
| Street address |
3606 E Mount Hope Rd
|
| City |
East Lansing |
| State/province |
MI |
| ZIP/Postal code |
48823 |
| Country |
USA |
| |
|
| Platform ID |
GPL10223 |
| Series (2) |
| GSE48451 |
Integrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by Marek's disease oncoprotein, Meq |
| GSE48454 |
Genes and pathways involved in cellular transformation by Marek's disease oncoprotein Meq |
|
| Relations |
| BioSample |
SAMN02222140 |
| SRA |
SRX317023 |
