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GEO accession:
Sample GSM117549
Query DataSets for GSM117549
Status
Public on Sep 30, 2006
Title
NA10861_Sty_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 4
Biomaterial provider
Coriell NA10861
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10861
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 30, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3720
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1855402
BB
0.007813
11.985
0.037642
0.070446
SNP_A-4249904
BB
0.007813
15.887
0.000000
0.000000
SNP_A-2174835
AA
0.007813
11.629
0.942666
0.842897
SNP_A-1880271
BB
0.007813
18.660
0.017857
0.066157
SNP_A-2313232
BB
0.007813
11.213
0.153705
0.000000
SNP_A-1790918
AA
0.007813
13.028
0.962866
1.000000
SNP_A-1812820
AA
0.007813
16.573
0.948462
0.939140
SNP_A-1825137
AA
0.007813
8.127
0.860988
1.000000
SNP_A-1855057
BB
0.007813
19.026
0.089240
0.000000
SNP_A-1855068
AA
0.007813
10.026
1.000000
0.868457
SNP_A-4249854
BB
0.015625
20.207
0.049887
0.000000
SNP_A-4249855
AA
0.007813
9.449
1.000000
0.916843
SNP_A-1855365
BB
0.046875
14.644
0.000000
0.000000
SNP_A-1856257
AA
0.007813
20.419
1.000000
1.000000
SNP_A-1862900
BB
0.007813
20.263
0.000000
0.000000
SNP_A-1894450
BB
0.007813
8.236
0.164215
0.106507
SNP_A-1900543
AA
0.007813
15.136
1.000000
1.000000
SNP_A-1905760
AA
0.007813
4.299
0.823736
0.908545
SNP_A-1907304
BB
0.007813
16.519
0.000000
0.076659
SNP_A-1941504
BB
0.031250
4.803
0.000000
0.000000
Total number of rows:
238304
Table truncated, full table size
11775 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117549.CEL.gz
44.9 Mb
(ftp)
(http)
CEL
GSM117549.raw.txt.gz
27.3 Mb
(ftp)
(http)
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