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GEO accession:
Sample GSM117465
Query DataSets for GSM117465
Status
Public on Sep 30, 2006
Title
NA19129_Sty_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 1
Biomaterial provider
Coriell NA19129
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19129
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 30, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3720
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1855402
BB
0.039063
12.826
0.072990
0.070913
SNP_A-4249904
BB
0.007813
23.397
0.027941
0.027566
SNP_A-2174835
AA
0.023438
15.620
0.959664
0.876444
SNP_A-1880271
BB
0.007813
18.321
0.008755
0.025000
SNP_A-2313232
BB
0.007813
10.362
0.140010
0.000000
SNP_A-1790918
AA
0.007813
18.158
0.948640
0.999499
SNP_A-1812820
AA
0.007813
12.835
0.927948
0.971464
SNP_A-1825137
AA
0.023438
8.137
0.855366
1.000000
SNP_A-1855057
BB
0.007813
19.632
0.038035
0.032422
SNP_A-1855068
AA
0.007813
11.976
1.000000
0.877308
SNP_A-4249854
BB
0.015625
10.035
0.116548
0.000000
SNP_A-4249855
AA
0.007813
11.954
0.946012
0.944315
SNP_A-1855365
BB
0.023438
10.318
0.000000
0.038947
SNP_A-1856257
AA
0.007813
26.706
1.000000
1.000000
SNP_A-1862900
BB
0.007813
12.115
0.026610
0.073874
SNP_A-1894450
BB
0.007813
8.381
0.087179
0.140102
SNP_A-1900543
AA
0.007813
19.911
1.000000
1.000000
SNP_A-1905760
AA
0.187500
2.713
0.778444
0.851078
SNP_A-1907304
BB
0.007813
11.618
0.000000
0.045873
SNP_A-1941504
BB
0.007813
8.703
0.000000
0.023711
Total number of rows:
238304
Table truncated, full table size
11788 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117465.CEL.gz
44.8 Mb
(ftp)
(http)
CEL
GSM117465.raw.txt.gz
13.3 Mb
(ftp)
(http)
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