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GEO accession:
Sample GSM117274
Query DataSets for GSM117274
Status
Public on Sep 30, 2006
Title
NA12753_Sty_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 3
Biomaterial provider
Coriell NA12753
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12753
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3720
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1855402
AB
0.007813
11.657
0.514970
0.547792
SNP_A-4249904
AB
0.007813
14.079
0.464200
0.516014
SNP_A-2174835
AB
0.023438
7.853
0.650766
0.575273
SNP_A-1880271
AB
0.007813
20.011
0.508667
0.463506
SNP_A-2313232
AB
0.007813
12.063
0.528479
0.545138
SNP_A-1790918
AB
0.007813
7.292
0.444952
0.517212
SNP_A-1812820
AB
0.023438
5.342
0.348227
0.390847
SNP_A-1825137
AB
0.007813
9.961
0.426107
0.392825
SNP_A-1855057
AB
0.007813
17.317
0.519787
0.474186
SNP_A-1855068
AB
0.132813
8.072
0.777595
0.517510
SNP_A-4249854
AB
0.093750
3.595
0.660954
0.705776
SNP_A-4249855
AB
0.007813
17.037
0.444770
0.449982
SNP_A-1855365
AB
0.015625
7.118
0.645570
0.432000
SNP_A-1856257
AB
0.007813
10.318
0.345049
0.395419
SNP_A-1862900
AB
0.007813
10.412
0.658388
0.596784
SNP_A-1894450
AB
0.007813
9.839
0.488895
0.494085
SNP_A-1900543
AB
0.187500
5.659
0.528505
0.086517
SNP_A-1905760
AB
0.007813
13.785
0.380132
0.456140
SNP_A-1907304
AB
0.007813
12.592
0.391990
0.495741
SNP_A-1941504
AB
0.453125
-0.198
0.622764
0.564815
Total number of rows:
238304
Table truncated, full table size
11768 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117274.CEL.gz
44.9 Mb
(ftp)
(http)
CEL
GSM117274.raw.txt.gz
27.2 Mb
(ftp)
(http)
TXT
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