GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM117260
Query DataSets for GSM117260
Status
Public on Sep 30, 2006
Title
NA12156_Sty_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: A3
Biomaterial provider
Coriell NA12156
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12156
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3720
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1855402
AB
0.007813
13.548
0.530007
0.528183
SNP_A-4249904
AB
0.007813
15.565
0.492166
0.479668
SNP_A-2174835
AB
0.007813
10.876
0.648587
0.547798
SNP_A-1880271
AB
0.007813
15.974
0.424177
0.479369
SNP_A-2313232
AB
0.007813
12.848
0.535095
0.594892
SNP_A-1790918
AB
0.007813
7.001
0.449337
0.551165
SNP_A-1812820
AB
0.062500
11.121
0.350719
0.377592
SNP_A-1825137
AB
0.023438
9.079
0.411727
0.358571
SNP_A-1855057
AB
0.007813
14.469
0.513375
0.421301
SNP_A-1855068
AB
0.007813
11.936
0.664625
0.557645
SNP_A-4249854
AB
0.062500
10.105
0.611044
0.620786
SNP_A-4249855
AB
0.007813
15.657
0.490750
0.345350
SNP_A-1855365
AB
0.046875
5.773
0.482482
0.390212
SNP_A-1856257
AB
0.007813
13.060
0.323236
0.430125
SNP_A-1862900
AB
0.007813
13.593
0.618975
0.623278
SNP_A-1894450
AB
0.023438
8.388
0.504821
0.607925
SNP_A-1900543
AB
0.132813
11.962
0.497751
0.206936
SNP_A-1905760
AB
0.007813
13.362
0.432267
0.448161
SNP_A-1907304
AB
0.023438
15.932
0.522140
0.514741
SNP_A-1941504
AB
0.375000
0.000
0.292720
0.462926
Total number of rows:
238304
Table truncated, full table size
11772 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117260.CEL.gz
44.2 Mb
(ftp)
(http)
CEL
GSM117260.raw.txt.gz
26.7 Mb
(ftp)
(http)
TXT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
