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Sample GSM11699 Query DataSets for GSM11699
Status Public on Apr 16, 2004
Title HME-CC, 36h, 0.01mM 5FU B
Sample type RNA
 
Channel 1
Source name pooled reference mRNA from 4 harvests of HME-CC cells
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name mRNA from "HME-CC, 36h, 0.01mM 5FU B"
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description immortalized human mammary epithelial cell line treated with 0.01 mM of 5-Fluorouracil for 36hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen
 
Submission date Oct 17, 2003
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) cperou@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL550
Series (2)
GSE763 Cell-type specific responses to chemotherapeutics in breast cancer
GSE1647 Prediction of toxicant-specific gene expression signatures following chemotherapeutic treatment of breast cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SPOT spot number on array
CH1_MEAN channel 1 mean intensity
CH1_SD standard deviation of channel 1 intensity
CH1_BKD_MEDIAN channel 1 background median intensity
CH1_BKD_SD standard deviation of channel 1 background median intensity
CH2_MEAN channel 2 mean intensity
CH2_SD standard deviation of channel 2 intensity
CH2_BKD_MEDIAN channel 2 background median intensity
CH2_BKD_SD standard deviation of channel 2 background median intensity
TOT_BPIX number of background pixels
TOT_SPIX number of spot pixels
CH2BN_MEDIAN channel 2 normalized background median intensity
CH2IN_MEAN channel 2 normalized mean intensity
CH1DL_MEAN channel 1 Lowess_normalized mean intensity
CH2DL_MEAN channel 2 Lowess_normalized mean intensity
LOG_RAT2N_MEAN log2_ratio of (CH2IN_MEAN - CH2BN_MEDIAN) over (CH1_MEAN - CH1_BKD_MEDIAN), CH2IN_MEAN and CH2BN_MEDIAN are global-normalized intensities
CORR correlation coefficient among pixels
FLAG Spot flag. 0:not flagged; negative:flagged as bad spots; positive:flagged as good spots
CONTROL Y: control gene; N: not control
UNF_VALUE LOG_RAT2L_MEAN; log2_ratio of CH2DL_MEAN over CH1DL_MEAN

Data table
ID_REF VALUE SPOT CH1_MEAN CH1_SD CH1_BKD_MEDIAN CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_MEDIAN CH2_BKD_SD TOT_BPIX TOT_SPIX CH2BN_MEDIAN CH2IN_MEAN CH1DL_MEAN CH2DL_MEAN LOG_RAT2N_MEAN CORR FLAG CONTROL UNF_VALUE
1 1239 89 18 88 14 94 32 98 33 51 208 105 100 .09 0 N
2 -1.02 6439 97 22 88 19 101 34 98 28 180 156 105 108 7 4 -1.492 .06 0 N -1.02
3 11639 103 32 89 22 89 28 98 42 167 156 105 95 -1 0 N
4 .003 16839 100 43 84 17 109 49 98 38 180 156 105 116 13 13 -.448 .21 0 N .003
5 1245 92 19 85 15 89 29 93 28 58 208 99 95 .08 0 N
6 6445 90 19 89 19 92 29 99 27 180 156 106 98 -1 0 N
7 .559 11645 339 257 86 17 423 369 94 26 202 156 100 451 238 350 .472 .84 0 N .559
8 .326 16845 120 46 86 16 130 56 97 31 185 156 103 139 30 38 .05 .34 0 N .326
9 1.3 2539 63 13 60 13 77 25 72 23 180 156 77 82 2 6 .83 .03 0 N 1.3
10 -.609 7739 76 18 67 14 89 32 85 25 76 208 91 95 7 5 -1.077 .12 0 N -.609
11 12939 70 15 64 15 79 25 82 26 151 156 87 84 .03 0 N
12 .263 18139 113 37 64 13 130 57 83 25 161 156 89 139 44 53 .033 .35 0 N .263
13 -1.784 2545 65 15 60 12 75 30 74 24 174 156 79 80 4 1 -2.229 .13 0 N -1.784
14 7745 63 13 61 12 76 25 77 30 76 208 82 81 .06 0 N
15 .961 12945 148 91 63 15 214 153 74 26 177 156 79 228 78 152 .813 .75 0 N .961
16 .148 18145 70 15 62 13 84 27 78 26 161 156 83 90 7 7 -.322 -1 0 N .148
17 -1.197 1240 1460 916 86 15 658 401 102 30 70 208 109 702 1323 577 -1.212 .84 0 N -1.197
18 -2.618 6440 97 23 88 17 98 31 97 30 180 156 103 105 7 1 -3.077 .03 0 N -2.618
19 -1.573 11640 4443 3622 89 17 1538 1262 95 28 188 156 101 1640 4323 1453 -1.5 .91 0 N -1.573
20 -.315 16840 114 40 85 16 116 53 99 35 180 156 106 124 25 20 -.678 .27 0 N -.315

Total number of rows: 20163

Table truncated, full table size 1597 Kbytes.




Supplementary data files not provided
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