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Sample GSM11696 Query DataSets for GSM11696
Status Public on Apr 16, 2004
Title ZR-75-1, 36h, 3.0mM 5FU B
Sample type RNA
 
Channel 1
Source name pooled reference mRNA from 4 harvests of ZR-75-1 cells
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name mRNA from "ZR-75-1, 36h, 3.0mM 5FU B"
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description breast cancer derived cell line treated with 3.0 mM of 5-Fluorouracil for 36hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen
 
Submission date Oct 17, 2003
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) cperou@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL550
Series (2)
GSE763 Cell-type specific responses to chemotherapeutics in breast cancer
GSE1647 Prediction of toxicant-specific gene expression signatures following chemotherapeutic treatment of breast cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SPOT spot number on array
CH1_MEAN channel 1 mean intensity
CH1_SD standard deviation of channel 1 intensity
CH1_BKD_MEDIAN channel 1 background median intensity
CH1_BKD_SD standard deviation of channel 1 background median intensity
CH2_MEAN channel 2 mean intensity
CH2_SD standard deviation of channel 2 intensity
CH2_BKD_MEDIAN channel 2 background median intensity
CH2_BKD_SD standard deviation of channel 2 background median intensity
TOT_BPIX number of background pixels
TOT_SPIX number of spot pixels
CH2BN_MEDIAN channel 2 normalized background median intensity
CH2IN_MEAN channel 2 normalized mean intensity
CH1DL_MEAN channel 1 Lowess_normalized mean intensity
CH2DL_MEAN channel 2 Lowess_normalized mean intensity
LOG_RAT2N_MEAN log2_ratio of (CH2IN_MEAN - CH2BN_MEDIAN) over (CH1_MEAN - CH1_BKD_MEDIAN), CH2IN_MEAN and CH2BN_MEDIAN are global-normalized intensities
CORR correlation coefficient among pixels
FLAG Spot flag. 0:not flagged; negative:flagged as bad spots; positive:flagged as good spots
CONTROL Y: control gene; N: not control
UNF_VALUE LOG_RAT2L_MEAN; log2_ratio of CH2DL_MEAN over CH1DL_MEAN

Data table
ID_REF VALUE SPOT CH1_MEAN CH1_SD CH1_BKD_MEDIAN CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_MEDIAN CH2_BKD_SD TOT_BPIX TOT_SPIX CH2BN_MEDIAN CH2IN_MEAN CH1DL_MEAN CH2DL_MEAN LOG_RAT2N_MEAN CORR FLAG CONTROL UNF_VALUE
1 1239 1615 2336 57 17 622 823 48 36 51 208 43 556 1631 548 -1.603 .96 -100 N -1.573
2 -.021 6439 112 54 60 61 110 60 46 109 177 156 41 98 58 57 .137 .88 0 N -.021
3 .958 11639 115 53 59 20 180 149 48 13 186 156 43 161 62 120 1.075 .8 0 N .958
4 -.871 16839 64 15 56 27 51 13 45 22 177 156 40 46 9 5 -.577 .53 0 N -.871
5 .268 1245 89 42 63 41 88 85 48 44 69 208 43 79 29 35 .459 .61 0 N .268
6 -.873 6445 68 19 57 12 54 17 46 13 180 156 41 48 13 7 -.622 .2 0 N -.873
7 1.109 11645 3046 2480 57 22 7149 6334 47 74 205 156 42 6389 3137 6767 1.086 .93 0 N 1.109
8 .215 16845 1536 1209 57 70 1934 1545 47 11 168 156 42 1728 1551 1800 .189 .88 0 N .215
9 .939 2539 51 9 50 8 48 11 45 13 61 208 40 43 1 2 1.423 .04 0 N .939
10 1.67 7739 81 45 63 154 128 176 55 208 73 208 49 114 20 65 1.858 .62 0 N 1.67
11 .952 12939 62 20 52 9 69 28 44 12 169 156 39 62 11 22 1.16 .27 0 N .952
12 .576 18139 145 78 50 10 213 149 46 34 154 156 41 190 103 154 .652 .7 0 N .576
13 .939 2545 91 46 48 7 142 103 40 8 70 208 36 127 48 92 1.084 .73 0 N .939
14 7745 144 163 56 15 198 256 49 72 73 208 44 177 96 137 .598 .82 -100 N .513
15 .806 12945 186 125 49 8 321 249 45 10 196 156 40 287 147 257 .848 .89 0 N .806
16 .746 18145 63 15 50 8 72 26 44 12 159 156 39 64 15 25 .945 .37 0 N .746
17 -1.582 1240 3940 2225 62 59 1474 832 50 35 70 208 45 1317 4066 1358 -1.608 .96 0 N -1.582
18 -.513 6440 78 21 58 28 64 20 46 57 177 156 41 57 23 16 -.314 .52 0 N -.513
19 -1.58 11640 35080 22438 59 20 13148 9131 49 12 219 156 44 11750 37029 12389 -1.581 .96 0 N -1.58
20 -.246 16840 110 44 57 9 102 45 46 11 177 156 41 91 59 50 -.083 .78 0 N -.246

Total number of rows: 20163

Table truncated, full table size 1660 Kbytes.




Supplementary data files not provided
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