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Sample GSM11692 Query DataSets for GSM11692
Status Public on Apr 16, 2004
Title ZR-75-1, 12h, 3.0mM 5FU
Sample type RNA
 
Channel 1
Source name pooled reference mRNA from 4 harvests of ZR-75-1 cells
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name mRNA from "ZR-75-1, 12h, 3.0mM 5FU "
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description breast cancer derived cell line treated with 3.0 mM of 5-Fluorouracil for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen
 
Submission date Oct 17, 2003
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) cperou@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL550
Series (2)
GSE763 Cell-type specific responses to chemotherapeutics in breast cancer
GSE1647 Prediction of toxicant-specific gene expression signatures following chemotherapeutic treatment of breast cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SPOT spot number on array
CH1_MEAN channel 1 mean intensity
CH1_SD standard deviation of channel 1 intensity
CH1_BKD_MEDIAN channel 1 background median intensity
CH1_BKD_SD standard deviation of channel 1 background median intensity
CH2_MEAN channel 2 mean intensity
CH2_SD standard deviation of channel 2 intensity
CH2_BKD_MEDIAN channel 2 background median intensity
CH2_BKD_SD standard deviation of channel 2 background median intensity
TOT_BPIX number of background pixels
TOT_SPIX number of spot pixels
CH2BN_MEDIAN channel 2 normalized background median intensity
CH2IN_MEAN channel 2 normalized mean intensity
CH1DL_MEAN channel 1 Lowess_normalized mean intensity
CH2DL_MEAN channel 2 Lowess_normalized mean intensity
LOG_RAT2N_MEAN log2_ratio of (CH2IN_MEAN - CH2BN_MEDIAN) over (CH1_MEAN - CH1_BKD_MEDIAN), CH2IN_MEAN and CH2BN_MEDIAN are global-normalized intensities
CORR correlation coefficient among pixels
FLAG Spot flag. 0:not flagged; negative:flagged as bad spots; positive:flagged as good spots
CONTROL Y: control gene; N: not control
UNF_VALUE LOG_RAT2L_MEAN; log2_ratio of CH2DL_MEAN over CH1DL_MEAN

Data table
ID_REF VALUE SPOT CH1_MEAN CH1_SD CH1_BKD_MEDIAN CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_MEDIAN CH2_BKD_SD TOT_BPIX TOT_SPIX CH2BN_MEDIAN CH2IN_MEAN CH1DL_MEAN CH2DL_MEAN LOG_RAT2N_MEAN CORR FLAG CONTROL UNF_VALUE
1 3480 113 219 65 12 126 242 67 27 559 156 56 105 54 52 .032 .64 -100 N -.052
2 -.084 2598 93 27 73 14 96 49 70 32 534 156 58 80 23 22 .113 .17 0 N -.084
3 .5 3482 70 23 63 12 83 42 67 33 559 156 56 69 9 13 .927 .18 0 N .5
4 2600 71 15 72 43 68 31 69 178 571 156 57 57 .09 0 N
5 -.32 3484 94 43 65 11 99 58 68 30 555 156 57 82 34 27 -.17 .41 0 N -.32
6 .305 2602 93 33 72 12 102 68 67 28 504 156 56 85 24 30 .471 .35 0 N .305
7 .719 3486 1054 890 61 20 1914 1822 67 75 652 156 56 1592 1056 1737 .629 .88 0 N .719
8 .281 2604 105 51 72 16 119 83 67 32 676 156 56 99 38 46 .39 .53 0 N .281
9 7008 54 11 58 86 64 28 64 27 578 156 53 53 .06 0 N
10 1.185 6126 75 19 71 12 81 40 65 28 552 156 54 67 5 12 1.734 .17 0 N 1.185
11 -.275 7010 76 28 58 11 82 43 61 27 566 156 51 68 21 18 -.044 .32 0 N -.275
12 .843 6128 100 33 72 13 133 80 68 40 518 156 57 111 32 57 .949 .52 0 N .843
13 -.276 7012 75 28 58 62 83 56 63 130 530 156 52 69 20 17 -.032 .88 0 N -.276
14 -2.121 6130 79 20 73 13 74 30 71 54 532 156 59 62 9 2 -1.266 .12 0 N -2.121
15 -.113 7014 138 77 57 11 155 103 61 24 673 156 51 129 91 84 -.051 .75 0 N -.113
16 .157 6132 78 20 71 16 80 35 67 38 728 156 56 67 9 10 .627 .16 0 N .157
17 -.445 10536 2181 1161 61 45 1819 1172 71 56 544 156 59 1513 2246 1650 -.544 .9 0 N -.445
18 9654 80 22 71 13 74 32 62 28 852 208 52 62 11 9 .149 .09 -50 N -.285
19 -.262 10538 12676 6780 60 52 11883 7030 66 184 510 156 55 9882 13370 11151 -.36 .9 0 N -.262
20 .212 9656 330 98 70 13 427 141 65 27 401 52 54 355 285 330 .211 .86 0 N .212

Total number of rows: 20163

Table truncated, full table size 1635 Kbytes.




Supplementary data files not provided
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