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Sample GSM11685 Query DataSets for GSM11685
Status Public on Apr 16, 2004
Title HME-CC, 36h, 0.01mM 5FU
Sample type RNA
 
Channel 1
Source name pooled reference mRNA from 4 harvests of HME-CC cells
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name mRNA from "HME-CC, 36h, 0.01mM 5FU "
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description immortalized human mammary epithelial cell line treated with 0.01 mM of 5-Fluorouracil for 36hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen
 
Submission date Oct 17, 2003
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) cperou@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL550
Series (2)
GSE763 Cell-type specific responses to chemotherapeutics in breast cancer
GSE1647 Prediction of toxicant-specific gene expression signatures following chemotherapeutic treatment of breast cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SPOT spot number on array
CH1_MEAN channel 1 mean intensity
CH1_SD standard deviation of channel 1 intensity
CH1_BKD_MEDIAN channel 1 background median intensity
CH1_BKD_SD standard deviation of channel 1 background median intensity
CH2_MEAN channel 2 mean intensity
CH2_SD standard deviation of channel 2 intensity
CH2_BKD_MEDIAN channel 2 background median intensity
CH2_BKD_SD standard deviation of channel 2 background median intensity
TOT_BPIX number of background pixels
TOT_SPIX number of spot pixels
CH2BN_MEDIAN channel 2 normalized background median intensity
CH2IN_MEAN channel 2 normalized mean intensity
CH1DL_MEAN channel 1 Lowess_normalized mean intensity
CH2DL_MEAN channel 2 Lowess_normalized mean intensity
LOG_RAT2N_MEAN log2_ratio of (CH2IN_MEAN - CH2BN_MEDIAN) over (CH1_MEAN - CH1_BKD_MEDIAN), CH2IN_MEAN and CH2BN_MEDIAN are global-normalized intensities
CORR correlation coefficient among pixels
FLAG Spot flag. 0:not flagged; negative:flagged as bad spots; positive:flagged as good spots
CONTROL Y: control gene; N: not control
UNF_VALUE LOG_RAT2L_MEAN; log2_ratio of CH2DL_MEAN over CH1DL_MEAN

Data table
ID_REF VALUE SPOT CH1_MEAN CH1_SD CH1_BKD_MEDIAN CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_MEDIAN CH2_BKD_SD TOT_BPIX TOT_SPIX CH2BN_MEDIAN CH2IN_MEAN CH1DL_MEAN CH2DL_MEAN LOG_RAT2N_MEAN CORR FLAG CONTROL UNF_VALUE
1 .633 3480 90 26 68 16 101 70 49 18 566 156 31 63 27 42 .57 .39 0 N .633
2 .891 2598 84 20 82 507 59 21 51 18 521 156 32 37 3 5 1.329 -1 0 N .891
3 -1.618 3482 87 24 70 15 58 23 49 16 541 156 31 36 22 7 -1.588 .13 0 N -1.618
4 2600 104 121 81 17 159 512 53 17 565 156 33 100 29 85 1.534 .49 -100 N 1.576
5 -1.565 3484 97 38 70 16 64 30 50 17 527 156 31 40 33 11 -1.618 .34 0 N -1.565
6 .545 2602 89 23 79 18 75 39 52 18 587 156 33 47 13 18 .531 .2 0 N .545
7 1.752 3486 639 504 64 15 3153 2550 50 20 696 156 31 1981 728 2451 1.761 .9 0 N 1.752
8 .965 2604 90 25 79 18 85 47 52 17 718 156 33 53 14 27 .914 .18 0 N .965
9 .537 7008 86 25 72 17 81 43 50 18 532 156 31 51 17 25 .476 .28 0 N .537
10 6126 83 19 85 20 59 23 59 28 613 156 37 37 -1 0 N
11 .329 7010 215 142 71 17 334 276 49 18 535 156 31 210 181 227 .314 .9 0 N .329
12 .783 6128 85 20 80 17 71 30 56 19 566 156 35 45 7 11 .914 -1 0 N .783
13 -.031 7012 86 24 70 16 76 38 52 18 548 156 33 48 20 19 -.086 .21 0 N -.031
14 6130 82 20 82 18 67 26 57 19 542 156 36 42 .05 0 N
15 .199 7014 196 112 72 16 275 215 51 20 680 156 32 173 156 179 .182 .87 0 N .199
16 -.469 6132 87 24 80 17 62 25 53 19 677 156 33 39 9 7 -.308 -1 0 N -.469
17 -1.415 10536 4436 2536 74 57 2693 1625 51 141 572 156 32 1692 5544 2079 -1.394 .93 0 N -1.415
18 1.256 9654 84 21 82 19 64 27 54 21 577 156 34 40 3 7 1.651 -1 0 N 1.256
19 -1.521 10538 11915 10216 72 2301 6738 5646 52 1135 538 156 33 4233 15074 5253 -1.496 .94 0 N -1.521
20 -.572 9656 116 45 80 19 92 67 55 22 528 156 35 58 44 30 -.631 .42 0 N -.572

Total number of rows: 20163

Table truncated, full table size 1602 Kbytes.




Supplementary data files not provided
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