|
| Status |
Public on May 14, 2014 |
| Title |
ABRF-ILMN-RNA-B-1 |
| Sample type |
SRA |
| |
|
| Source name |
ABRF-ILMN-RNA-B
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Brain
reference rna: FirstChoice® Human Brain Reference Total RNA
reference rna cat. #: #6050
reference rna lot #: 105P055201A
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
NA
PolyA; RNA libraries were prepared for sequencing using standard unstranded PolyA Illumina protocols with TruSeq RNA Sample Preparation Kit v2
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
Pure Human Brain Reference RNA Sample from Ambion, Inc.
|
| Data processing |
STAR Aligner v2.3.0 Long
Read counts were calculated using the Rmake pipeline (http://physiology.med.cornell.edu/faculty/mason/lab/r-make/) with Gencode v12 annotation.
Genome_build: hg19
Supplementary_files_format_and_content: Counts table
|
| |
|
| Submission date |
Jun 17, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Christopher E Mason |
| E-mail(s) |
chm2042@med.cornell.edu
|
| Organization name |
Weill Cornell Medical College
|
| Department |
Physiology and Biophysics
|
| Lab |
Christopher Mason Lab
|
| Street address |
1305 York Ave
|
| City |
New York |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (2) |
| GSE46876 |
The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq. |
| GSE48035 |
The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq [Illumina HiSeq 2500] |
|
| Relations |
| BioSample |
SAMN02205302 |
| SRA |
SRX307101 |
