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| Status |
Public on Aug 08, 2014 |
| Title |
SEQC_LIF_SQW_D_3_L05_AAGAGGAAAA_FC1_23311016_20120217 |
| Sample type |
SRA |
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| Source name |
Mix of Sample A (UHRR) and Sample B (HBRR) (1:3)
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| Organism |
Homo sapiens |
| Characteristics |
seqc sample: D
platform: AB 5500 Genetic Analyzer
site: SQW
library id: 3
lane: L05
barcode: AAGAGGAAAA
flowcell: FC1
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| Extracted molecule |
total RNA |
| Extraction protocol |
Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
AB 5500 Genetic Analyzer |
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| Data processing |
Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.
Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site
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| Submission date |
Jun 10, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Leming Shi |
| E-mail(s) |
lemingshi@fudan.edu.cn
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| Phone |
+86-18616827008
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| Organization name |
Fudan University
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| Department |
School of Life Sciences
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| Lab |
Center for Pharmacogenomics
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| Street address |
2005 Songhu Road
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| City |
Shanghai |
| ZIP/Postal code |
200438 |
| Country |
China |
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| Platform ID |
GPL16558 |
| Series (2) |
| GSE47774 |
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium |
| GSE47792 |
SEQC Project |
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| Relations |
| SRA |
SRX304174 |
| BioSample |
SAMN02200864 |
| Supplementary data files not provided |
SRA Run Selector |
| Processed data are available on Series record |
| Raw data are available in SRA |
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