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Sample GSM1154002 Query DataSets for GSM1154002
Status Public on Dec 31, 2014
Title IMSC#3, 72 hrs adipocyte differentiation, replicate 2
Sample type RNA
Source name Immortalized human bone marrow-derived mesenchymal stromal cell line IMSC#3, 72 hrs adipocyte differentiation, replicate 2
Organism Homo sapiens
Characteristics cell line: IMSC#3
sample origin: Human bone marrow-derived mesenchymal stromal cell
gender: Male
Growth protocol Cells were seeded in 48- and 6-well plates (Nunc) at 25,000 and 100,000 cells per well, respectively. Next day, the medium was replaced with adipocyte induction medium containing 1 µM Dexamethasone (Decadron), 0.5 mM iso-butyl-methyl-xanthine and 50 µM Indomethacine (both from Sigma-Aldrich). The differentiation medium was replaced twice a week for 21 days.
Extracted molecule total RNA
Extraction protocol RNA was isolated using the standard TRIzol procedure (Invitrogen), and further purified with an RNeasy mini column (Qiagen GmbH, Hilden, Germany), according to the manufacturers’ instructions.
Label Biotin
Label protocol Biotinylated cRNA was prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data was quantile normalisation in GeneSpring GX10 (Agilent)
Submission date Jun 05, 2013
Last update date Dec 31, 2014
Contact name Leonardo A. Meza-Zepeda
Phone +47-99035706
Organization name Oslo University Hospital
Department Department of Tumor Biology
Lab Meza-Zepeda
Street address Ullernchausseen 70
City Oslo
ZIP/Postal code 0310
Country Norway
Platform ID GPL6884
Series (2)
GSE47647 Generation and Characterization of an immortalized human mesenchymal stromal cell line model [Illumina adipocyte differentiation]
GSE47651 Generation and Characterization of an immortalized human mesenchymal stromal cell line model

Data table header descriptions
VALUE Quantile normalised intensities in GeneSpring GX10 (Agielnt)
72h-2_D.Detection Pval

Data table
ID_REF VALUE 72h-2_D.Detection Pval
ILMN_1343291 214055.5921 0.0000
ILMN_1343295 52508.7416 0.0000
ILMN_1651199 323.6486 0.1225
ILMN_1651209 303.0706 0.2740
ILMN_1651210 267.3467 0.8195
ILMN_1651221 298.5372 0.3347
ILMN_1651228 18198.9046 0.0000
ILMN_1651229 1141.0861 0.0000
ILMN_1651230 278.5470 0.6390
ILMN_1651232 464.3758 0.0119
ILMN_1651235 315.6439 0.1739
ILMN_1651236 313.2124 0.1858
ILMN_1651237 517.1683 0.0105
ILMN_1651238 256.3608 0.9170
ILMN_1651249 292.9060 0.4071
ILMN_1651253 313.2124 0.1831
ILMN_1651254 8206.0544 0.0000
ILMN_1651259 304.2339 0.2675
ILMN_1651260 271.9561 0.7431
ILMN_1651262 23588.3355 0.0000

Total number of rows: 48803

Table truncated, full table size 1391 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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