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Sample GSM113940 Query DataSets for GSM113940
Status Public on Aug 24, 2007
Title Normal primary thyroid cells, thyroid #4, IL1-beta treatment
Sample type RNA
Source name thyroid
Organism Homo sapiens
Characteristics Normal primary thyroid cells, IL1-beta treatment
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Normal primary thyroid cells, thyroid #4, IL1-beta treatment
Data processing Ann Arbor quantile-normalized trimmed-mean method
Submission date Jun 12, 2006
Last update date Aug 24, 2007
Contact name Rork Kuick
Phone 734-936-9241
Organization name University of Michigan
Street address University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City Ann Arbor
State/province MI
ZIP/Postal code 48109-2029
Country USA
Platform ID GPL571
Series (1)
GSE5054 Effect of INF-gamma and IL1-beta on thyroid cells

Data table header descriptions
VALUE quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms

Data table
201963_at 3.28171497
207275_s_at 3.006466042
202912_at 3.771219902
205013_s_at 2.537819095
206513_at 2.187520721
205568_at 2.274157849
205870_at 1.949390007
202357_s_at 4.060508976
207571_x_at 2.596597096
210785_s_at 2.639486489
221245_s_at 3.416973173
220066_at 2.514547753
205467_at 2.357934847
209310_s_at 2.411619706
1405_i_at 3.526855987
204655_at 3.583538819
208075_s_at 3.152594078
214038_at 2.488550717
205692_s_at 2.869818208
204440_at 2.758911892

Total number of rows: 22277

Table truncated, full table size 495 Kbytes.

Supplementary file Size Download File type/resource
GSM113940.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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