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Sample GSM113939 Query DataSets for GSM113939
Status Public on Aug 24, 2007
Title Normal primary thyroid cells, thyroid #4, IFN-gamma treatment
Sample type RNA
Source name thyroid
Organism Homo sapiens
Characteristics Normal primary thyroid cells, IFN-gamma treatment
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Normal primary thyroid cells, thyroid #4, IFN-gamma treatment
Data processing Ann Arbor quantile-normalized trimmed-mean method
Submission date Jun 12, 2006
Last update date Aug 24, 2007
Contact name Rork Kuick
Phone 734-936-9241
Organization name University of Michigan
Street address University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City Ann Arbor
State/province MI
ZIP/Postal code 48109-2029
Country USA
Platform ID GPL571
Series (1)
GSE5054 Effect of INF-gamma and IL1-beta on thyroid cells

Data table header descriptions
VALUE quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms

Data table
201963_at 3.34752516
207275_s_at 3.071882007
202912_at 3.571825249
205013_s_at 2.414973348
206513_at 2.568201724
205568_at 2.193124598
205870_at 2.06069784
202357_s_at 3.094121596
207571_x_at 2.698100546
210785_s_at 2.63748973
221245_s_at 3.102433706
220066_at 2.198657087
205467_at 2.324282455
209310_s_at 2.342422681
1405_i_at 2.155336037
204655_at 2.238046103
208075_s_at 2.064457989
214038_at 2.170261715
205692_s_at 2.404833717
204440_at 2.320146286

Total number of rows: 22277

Table truncated, full table size 495 Kbytes.

Supplementary file Size Download File type/resource
GSM113939.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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