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Sample GSM1124548 Query DataSets for GSM1124548
Status Public on Apr 20, 2013
Title D_133A_55_HC_1_C
Sample type RNA
 
Source name Post-mortem human brain tissue: Hippocampus
Organism Homo sapiens
Characteristics genechip assay site: D
original genechip type: U133A
subject id: 55
brain region: hippocampus
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
Data processing The data were analyzed with the RMA method using custom CDF file hgu133ahsentrezg.cdf.
 
Submission date Apr 17, 2013
Last update date Apr 20, 2013
Contact name Andy W Lin
E-mail(s) andylin@umich.edu
Organization name University of Michigan
Department MBNI
Lab Microarray
Street address 205 Zina Pitcher Place
City Ann Arbor
State/province MI
ZIP/Postal code 48103
Country USA
 
Platform ID GPL17027
Series (1)
GSE45642 Circadian patterns of gene expression in the human brain and disruption in major depressive disorder [control set]

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
10000_at 4.415250108
10001_at 5.729918993
10002_at 4.896742019
10003_at 4.579106587
100048912_at 6.303493857
10004_at 4.90310514
10005_at 7.840161882
10006_at 8.613102394
10007_at 7.735572778
10009_at 4.183076114
1000_at 8.204546987
10010_at 5.473000488
100127886_at 4.118733608
100127972_at 4.848018626
100128008_at 6.263382126
100128062_at 9.508688753
100128414_at 4.16297211
100128919_at 6.665318591
100129015_at 4.553398872
100129128_at 4.387776491

Total number of rows: 11979

Table truncated, full table size 238 Kbytes.




Supplementary file Size Download File type/resource
GSM1124548_D_133A_55_HC_1_C.cel.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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