NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM109583 Query DataSets for GSM109583
Status Public on Jun 08, 2006
Title cplxpro15-fv
Sample type RNA
 
Source name Preovulatory ovary Full ovarian tissue Female #PRO15 Autumn-spawning strain
Organism Oncorhynchus mykiss
Characteristics Ovarian stage: post-vitellogenesis
Extracted molecule total RNA
Label P33
 
Description Nylon array protocol
Data processing Low oligonucleotide signals (lower than three times the background level) were excluded from the analysis. At this step, signal processing was performed using the vector oligonucleotide data to correct each spot signal by the actual amount of DNA present in each spot. After correction, signal was normalized by dividing each gene expression value by the median value of the array.
 
Submission date May 19, 2006
Last update date Sep 08, 2006
Contact name Julien Bobe
E-mail(s) Julien.Bobe@rennes.inra.fr
Phone (33) 2 23 48 57 24
Organization name Institut National de la Recherche Agronomique
Lab INRA-SCRIBE
Street address Campus de Beaulieu
City Rennes
ZIP/Postal code 35000
Country France
 
Platform ID GPL3650
Series (1)
GSE4871 Preovulatory ovary

Data table header descriptions
ID_REF
VALUE normalized value
QIM_CONST image signal intensity constant diameter
QFIT_VAR fit signal intensity varariable diameter
FIT_CORR fot correction
QIM_VAR image signal intensity variable diameter
QFIT_CONST fit signal intensity constant diameter
DIAM variable diameter
SPOT_QUAL spot quality
OVER_CORR overshining correction
QM quality measure

Data table
ID_REF VALUE QIM_CONST QFIT_VAR FIT_CORR QIM_VAR QFIT_CONST DIAM SPOT_QUAL OVER_CORR QM
tcay0002.p.10 1.4194 325.627 193.879 0.00754065 198.845 323.889 195.604 1 0.929193 0
tcac0006.m.09 0.5768 223.482 244.945 0.00159937 343.577 181.698 344.242 0 0.838875 0.125758
1RT153B07_B_A04 0.8688 243.744 116.252 0.00862536 118.223 246.002 175.762 0 0.92891 0
1RT118M16_C_G08 2.0345 282.574 118.513 0.0133971 120.164 287.657 162.468 0 0.875395 0.104239
1RT85K12_C_F06 0 153.413 84.0579 0.00546687 85.4306 153.906 181.245 1 0.914305 0
1RT56F05_B_C03 0.5020 106.05 34.7617 0.00433154 34.5095 106.236 146.5 0 0.902176 0
1RT31H02_D_D01 1.2629 118.968 84.2178 0.00256505 85.3422 119.98 211.719 1 0.910662 0
tcbk0048.o.20 0.8776 203.551 203.229 0.00074806 203.551 203.229 276.802 1 0.935294 0
tcbk0023.p.16 0.3069 72.2326 36.4102 0.00337555 36.2753 73.6814 181.774 0 0.9033 0
tcbi0011.c.11 0.6518 296.763 297.081 0.00222445 296.763 297.081 274.629 1 0.899913 0
tcba0006.i.11 0.3656 133.697 89.3555 0.00421073 90.4641 134.337 209.706 0 0.930661 0
tcay0024.o.03 0.6111 193.559 193.704 0.00319108 193.559 193.704 274.839 1 0.904868 0
tcay0003.a.01 1.0311 253.96 27.71 0.0129557 27.4327 259.272 85.8931 0 0.838293 0.125758
tcac0006.m.21 10.5323 3274.74 3267.12 -0.00879858 3274.74 3267.12 269.885 1 0.935015 0
1RT153C22_C_B11 0.7690 195.783 184.973 0.00159937 307.129 141.39 344.242 0 0.803989 0.125758
1RT119A11_A_A06 0.4968 118.624 79.8001 0.00493926 80.8069 119.864 214.001 0 0.921821 0
1RT85M14_C_G07 4.0593 402.174 381.613 0.00410626 382.304 402.237 267.361 1 0.947859 0
1RT56G21_A_D11 5.0007 704.372 674.029 -0.000655107 674.545 704.256 267.362 1 0.948482 0
water 0 69.1104 82.5443 0.00159937 108.908 58.7136 344.242 0 0.806077 0
tcbk0060.c.15 0.4759 67.4816 17.3457 0.00317633 17.3406 68.3454 127.482 0 0.897326 0

Total number of rows: 9216

Table truncated, full table size 762 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap