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Sample GSM109579 Query DataSets for GSM109579
Status Public on Jun 08, 2006
Title cplxpro13-fv
Sample type RNA
 
Source name Preovulatory ovary Full ovarian tissue Post Vitellogenesis Female #PRO13 Autumn-spawning strain
Organism Oncorhynchus mykiss
Characteristics Ovarian stage: post-vitellogenesis
Extracted molecule total RNA
Label P33
 
Description Nylon array protocol
Data processing Low oligonucleotide signals (lower than three times the background level) were excluded from the analysis. At this step, signal processing was performed using the vector oligonucleotide data to correct each spot signal by the actual amount of DNA present in each spot. After correction, signal was normalized by dividing each gene expression value by the median value of the array.
 
Submission date May 19, 2006
Last update date Sep 08, 2006
Contact name Julien Bobe
E-mail(s) Julien.Bobe@rennes.inra.fr
Phone (33) 2 23 48 57 24
Organization name Institut National de la Recherche Agronomique
Lab INRA-SCRIBE
Street address Campus de Beaulieu
City Rennes
ZIP/Postal code 35000
Country France
 
Platform ID GPL3650
Series (1)
GSE4871 Preovulatory ovary

Data table header descriptions
ID_REF
VALUE normalized value
QIM_CONST image signal intensity constant diameter
QFIT_VAR fit signal intensity varariable diameter
FIT_CORR fot correction
QIM_VAR image signal intensity variable diameter
QFIT_CONST fit signal intensity constant diameter
DIAM variable diameter
SPOT_QUAL spot quality
OVER_CORR overshining correction
QM quality measure

Data table
ID_REF VALUE QIM_CONST QFIT_VAR FIT_CORR QIM_VAR QFIT_CONST DIAM SPOT_QUAL OVER_CORR QM
tcbi0010.p.08 0.7276 241.813 245.394 0.00628094 241.813 245.394 272.021 0 0.90149 0
tcba0006.g.01 4.1891 1260.04 1260.52 -0.00462674 1260.04 1260.52 282.036 1 0.974335 0
tcay0024.k.24 0.9597 163.69 112.219 0.00637907 113.11 166.46 222.813 0 0.933959 0
tcay0002.o.01 3.7727 296.839 282.929 0.00160142 284.498 297.035 265.902 1 0.952716 0
tcac0006.l.05 0.3755 104.484 147.364 0.00161513 163.33 104.727 345.292 0 0.898464 0
1RT152P21_B_H11 8.3562 1045.1 997.629 0.000437138 1004 1043.65 268.596 1 0.96505 0
1RT118I08_C_E04 1.1902 188.525 2.82066 0.0105232 2.78891 205.015 40.9195 0 0.893122 0
1RT85I16_C_E08 0.7176 91.5951 47.5205 0.00449694 47.7996 91.7973 200.017 0 0.891983 0
1RT56A24_C_A12 0.8296 166.809 158.912 0.0023517 158.13 167.953 264.435 1 0.927684 0
1RT31F13_B_C07 1.5272 236.123 237.12 0.00170778 236.123 237.12 269.394 1 0.934557 0
tcbk0048.m.21 0.6400 193.618 175.139 0.00161694 176.479 194.651 253.393 1 0.918335 0
tcbk0023.p.12 0.4154 94.0441 51.8833 0.00342387 52.4972 95.4777 184.043 0 0.922436 0
tcbi0010.p.17 0.7686 235.543 170.677 0.00541776 177.57 234.68 217.674 1 0.926037 0
tcba0006.g.10 1.3084 321.699 189.418 0.00817495 194.765 322.245 197.228 1 0.914437 0
tcay0024.l.12 0.9117 153.585 94.2056 0.00419132 95.552 153.83 202.718 1 0.927848 0
tcay0002.p.05 0.2319 72.4361 111.798 0.00161513 109.206 78.3214 345.292 0 0.891796 0
tcac0006.l.24 0.8489 238.762 190.83 0.00344833 194.69 236.924 249.694 1 0.949456 0
1RT153A20_C_A10 1.4945 302.184 408.369 0.00847736 401.912 310.046 331.092 0 0.932167 0
1RT118K04_C_F02 7.3598 1902.67 1897.23 -0.00809739 1902.67 1897.23 272.976 1 0.922548 0
1RT85J03_B_E02 1.2592 143.711 171.278 0.00161513 217.586 129.428 345.292 0 0.863286 0

Total number of rows: 9216

Table truncated, full table size 760 Kbytes.




Supplementary data files not provided
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