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| Status |
Public on Sep 01, 2014 |
| Title |
sRNA from strawberry flower |
| Sample type |
SRA |
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| Source name |
flower
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| Organism |
Fragaria vesca |
| Characteristics |
line: inbred line ‘Yellow Wonder 5AF7’
tissue: flowers
developmental stage: 1 day-opening
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| Growth protocol |
grown in growth chambers (Hollender et al., 2012)
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNAs were isolated from 1 day-opening flowers of the inbred line Yellow Wonder 5AF7 grown in growth chambers (Hollender et al., 2012) using RNeasy Plant Mini Kit (Qiagen, Valencia, CA). Small RNAs were enriched by precipitating the supernatant passing through Qiashedder spin column. The recovered small RNA samples were used for library construction and deep sequencing in Genomics Resources Core Facility at Weill Cornell Medical College (New York, NY).
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
FASTA toolkits (http://hannonlab.cshl.edu/fastx_toolkit/) was used for data processing, including format conversion, adaptor trimming and read collapsing.
Genome_build: n/a
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| Submission date |
Mar 06, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Rui Xia |
| E-mail(s) |
rxia@scau.edu.cn
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| Organization name |
South China Agricultural University
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| Department |
Horticulture
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| Lab |
Xia
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| Street address |
483 Wushan Rd, Tianhe
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| City |
Guangzhou |
| State/province |
Guangdong |
| ZIP/Postal code |
510640 |
| Country |
China |
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| Platform ID |
GPL16761 |
| Series (1) |
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| Relations |
| SRA |
SRX248546 |
| BioSample |
SAMN01974911 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1094102_Fve_FLO_processed.txt.gz |
58.3 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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