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Sample GSM1079517 Query DataSets for GSM1079517
Status Public on May 24, 2013
Title PR01-037
Sample type genomic
Source name PR01-037_8942297033_R04C02
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 4
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-037_8942297033_R04C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.501252740369558
cg00000108 0.93469948034121
cg00000109 0.892403932082216
cg00000165 0.232007575757576
cg00000236 0.794172772192878
cg00000289 0.637592137592138
cg00000292 0.81763683753258
cg00000321 0.286964532473514
cg00000363 0.410396909027046
cg00000622 0.0437980888744808
cg00000658 0.819987680936249
cg00000714 0.224676616915423
cg00000721 0.914277044454559
cg00000734 0.0848526863084922
cg00000769 0.0992935022012492
cg00000807 0.787214137214137
cg00000884 0.842404887531241
cg00000905 0.106580604534005
cg00000924 0.553215452190562
cg00000948 0.841363726988768

Total number of rows: 483266

Table truncated, full table size 13742 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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