|
Status |
Public on May 24, 2013 |
Title |
PR01-037 |
Sample type |
genomic |
|
|
Source name |
PR01-037_8942297033_R04C02
|
Organism |
Homo sapiens |
Characteristics |
prepartum depression: yes postpartum depression: yes array batch: 4 experimental batch: 2 cross batch control: no
|
Extracted molecule |
genomic DNA |
Extraction protocol |
All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
|
Label |
Cy3, Cy5
|
Label protocol |
Standard Illumina protocol
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|
|
Hybridization protocol |
Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
|
Scan protocol |
Polymer-coated chips were image-processed in Illumina's iScan scanner
|
Description |
PR01-037_8942297033_R04C02
|
Data processing |
Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R. FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
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|
|
Submission date |
Feb 06, 2013 |
Last update date |
May 24, 2013 |
Contact name |
Jerry Guintivano |
E-mail(s) |
jchoa002@umaryland.edu
|
Organization name |
Johns Hopkins University
|
Street address |
720 Rutland Avenue, Ross 1068
|
City |
Baltimore |
State/province |
MD |
ZIP/Postal code |
21205 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE44132 |
Antenatal Blood DNA Methylation Profiles |
|