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Sample GSM1079512 Query DataSets for GSM1079512
Status Public on May 24, 2013
Title PR01-061
Sample type genomic
Source name PR01-061_8942297033_R05C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: no
array batch: 4
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-061_8942297033_R05C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.555720653789004
cg00000108 0.945675752145619
cg00000109 0.892471213463242
cg00000165 0.219389887170915
cg00000236 0.738590796257399
cg00000289 0.633291614518148
cg00000292 0.846608946608947
cg00000321 0.316591523895401
cg00000363 0.367824238128987
cg00000622 0.0482125401321453
cg00000658 0.838657913931437
cg00000714 0.215452235977257
cg00000721 0.94294670846395
cg00000734 0.0835006320172504
cg00000769 0.0902166766736629
cg00000807 0.82523340903356
cg00000884 0.889966143428747
cg00000905 0.092616700762507
cg00000924 0.585936643647923
cg00000948 0.880434782608696

Total number of rows: 483266

Table truncated, full table size 13742 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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