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Sample GSM1079510 Query DataSets for GSM1079510
Status Public on May 24, 2013
Title PR01-084 3
Sample type genomic
Source name PR01-084_8942297033_R03C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 4
experimental batch: 2
cross batch control: yes
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-084_8942297033_R03C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.545411089866157
cg00000108 0.953333993857129
cg00000109 0.88909972591187
cg00000165 0.177101618880437
cg00000236 0.77765194412986
cg00000289 0.731571109456441
cg00000292 0.82334167169844
cg00000321 0.285515449568526
cg00000363 0.384200673904905
cg00000622 0.0361845477804882
cg00000658 0.78777366635831
cg00000714 0.181410819051139
cg00000721 0.892968171724648
cg00000734 0.0775575170018811
cg00000769 0.105076380368784
cg00000807 0.830401082677165
cg00000884 0.86206896551724
cg00000905 0.0910835805269586
cg00000924 0.526579925650558
cg00000948 0.857992565055762

Total number of rows: 483266

Table truncated, full table size 13745 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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