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Sample GSM1079504 Query DataSets for GSM1079504
Status Public on May 24, 2013
Title PR01-085
Sample type genomic
Source name PR01-085_6285617092_R04C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 3
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-085_6285617092_R04C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.59423324742268
cg00000108 0.946907867059319
cg00000109 0.90489533542113
cg00000165 0.203654280435229
cg00000236 0.817743190661479
cg00000289 0.703221136445892
cg00000292 0.876827896512936
cg00000321 0.386207511820858
cg00000363 0.43634446397188
cg00000622 0.0380820381546882
cg00000658 0.865258097165992
cg00000714 0.311500689879068
cg00000721 0.930866601752678
cg00000734 0.108669921586033
cg00000769 0.096571802661574
cg00000807 0.866294333858418
cg00000884 0.880331389996932
cg00000905 0.108168179292462
cg00000924 0.523554002620578
cg00000948 0.904327013919506

Total number of rows: 483266

Table truncated, full table size 13728 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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