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Sample GSM1079496 Query DataSets for GSM1079496
Status Public on May 24, 2013
Title PR01-036
Sample type genomic
Source name PR01-036_6285617078_R06C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 2
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-036_6285617078_R06C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.606891531181752
cg00000108 0.96395953351131
cg00000109 0.911746329272102
cg00000165 0.162411347517731
cg00000236 0.829464448912447
cg00000289 0.720555306762203
cg00000292 0.895940086716594
cg00000321 0.322818190864763
cg00000363 0.409252027635927
cg00000622 0.0367062291427057
cg00000658 0.879890925233052
cg00000714 0.261093574253474
cg00000721 0.959183673469388
cg00000734 0.0869959906195628
cg00000769 0.0519118892416343
cg00000807 0.866320877048214
cg00000884 0.927890245942781
cg00000905 0.0878823728240662
cg00000924 0.620837276373305
cg00000948 0.921788273286911

Total number of rows: 483266

Table truncated, full table size 13745 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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