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Sample GSM1079487 Query DataSets for GSM1079487
Status Public on May 24, 2013
Title PR01-005
Sample type genomic
Source name PR01-005_6285617078_R01C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 2
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-005_6285617078_R01C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.554921214889244
cg00000108 0.937474989995998
cg00000109 0.900056043340183
cg00000165 0.233534577387486
cg00000236 0.737903225806452
cg00000289 0.64007336084365
cg00000292 0.870200297384763
cg00000321 0.325940548072457
cg00000363 0.400886132033673
cg00000622 0.0300924939811773
cg00000658 0.850028069612639
cg00000714 0.203663232386305
cg00000721 0.936293436293436
cg00000734 0.106669106211692
cg00000769 0.0834235710887274
cg00000807 0.88240232844509
cg00000884 0.896980786825252
cg00000905 0.111036339165545
cg00000924 0.572374817695673
cg00000948 0.87800986364955

Total number of rows: 483266

Table truncated, full table size 13734 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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