GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1071417 Query DataSets for GSM1071417
Status Public on Dec 31, 2013
Title Normal-5 [miRNA]
Sample type RNA
Source name non-neoplastic pancreas
Organism Homo sapiens
Characteristics tissue: non-neoplastic pancreas
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description N-5
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 6.024928271
A_25_P00010020 5.739139904
A_25_P00010021 5.691873354
A_25_P00010023 5.797267696
A_25_P00010041 5.627133315
A_25_P00010042 5.576795811
A_25_P00010043 5.50779464
A_25_P00010044 5.515933599
A_25_P00010047 8.904887161
A_25_P00010048 6.852763451
A_25_P00010053 13.00158944
A_25_P00010054 10.52988821
A_25_P00010062 6.882423271
A_25_P00010063 5.930902944
A_25_P00010070 13.69030045
A_25_P00010071 12.92950356
A_25_P00010072 12.68268182
A_25_P00010073 10.59645793
A_25_P00010078 10.78756123
A_25_P00010079 8.512549882

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071417_N-5.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap