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Sample GSM1071408 Query DataSets for GSM1071408
Status Public on Dec 31, 2013
Title NET-2 [miRNA]
Sample type RNA
Source name neuroendocrine tumor
Organism Homo sapiens
Characteristics gender: male
age: 43
tissue: neuroendocrine tumor (NET)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description E-2
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 6.597995891
A_25_P00010020 6.004049569
A_25_P00010021 5.738727756
A_25_P00010023 6.322917496
A_25_P00010041 5.547050386
A_25_P00010042 5.586879798
A_25_P00010043 5.541668596
A_25_P00010044 5.400522226
A_25_P00010047 10.23672275
A_25_P00010048 8.518562706
A_25_P00010053 13.07065948
A_25_P00010054 10.77717897
A_25_P00010062 6.809588854
A_25_P00010063 5.940231124
A_25_P00010070 12.75466315
A_25_P00010071 12.19066995
A_25_P00010072 11.95134259
A_25_P00010073 10.09076336
A_25_P00010078 7.146489317
A_25_P00010079 6.169867506

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071408_E-2.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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