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Sample GSM1071402 Query DataSets for GSM1071402
Status Public on Dec 31, 2013
Title PCA-2 [miRNA]
Sample type RNA
Source name ductal adenocarcinoma
Organism Homo sapiens
Characteristics gender: male
age: 59
tissue: ductal adenocarcinoma (PCA)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description A-2
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.813572015
A_25_P00010020 5.668724429
A_25_P00010021 5.591058137
A_25_P00010023 5.635559463
A_25_P00010041 5.582141277
A_25_P00010042 5.49643002
A_25_P00010043 5.592936838
A_25_P00010044 5.402822642
A_25_P00010047 7.915553251
A_25_P00010048 6.285250691
A_25_P00010053 12.56501162
A_25_P00010054 9.387140279
A_25_P00010062 6.317127594
A_25_P00010063 5.778943693
A_25_P00010070 14.66570567
A_25_P00010071 13.32917624
A_25_P00010072 12.71403732
A_25_P00010073 9.779033938
A_25_P00010078 8.103104021
A_25_P00010079 6.461156651

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071402_A-2.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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