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Sample GSM1071400 Query DataSets for GSM1071400
Status Public on Dec 31, 2013
Title SPN-14 [miRNA]
Sample type RNA
Source name ductal adenocarcinoma
Organism Homo sapiens
Characteristics gender: female
age: 30
tissue: ductal adenocarcinoma (PCA)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description S-14
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.742501438
A_25_P00010020 5.619670817
A_25_P00010021 5.67872144
A_25_P00010023 5.647198278
A_25_P00010041 5.578404947
A_25_P00010042 5.614367415
A_25_P00010043 5.586746796
A_25_P00010044 5.621523919
A_25_P00010047 8.826170471
A_25_P00010048 7.22488963
A_25_P00010053 14.4704014
A_25_P00010054 12.45405961
A_25_P00010062 5.624845955
A_25_P00010063 5.590627441
A_25_P00010070 13.16547163
A_25_P00010071 12.64648952
A_25_P00010072 12.15433155
A_25_P00010073 9.977285595
A_25_P00010078 8.140464933
A_25_P00010079 6.693624028

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071400_S-14.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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