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Sample GSM1071393 Query DataSets for GSM1071393
Status Public on Dec 31, 2013
Title SPN-7 [miRNA]
Sample type RNA
Source name solid-pseudopapillary neoplasm
Organism Homo sapiens
Characteristics gender: female
age: 17
tissue: Solid-pseudopapillary neoplasm of pancreas (SPN)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description S-7
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.777813222
A_25_P00010020 5.663330305
A_25_P00010021 5.721177524
A_25_P00010023 5.714937706
A_25_P00010041 5.548691394
A_25_P00010042 5.628802217
A_25_P00010043 5.573413409
A_25_P00010044 5.526931286
A_25_P00010047 9.601920008
A_25_P00010048 8.021561706
A_25_P00010053 13.82963108
A_25_P00010054 11.52954103
A_25_P00010062 6.105867584
A_25_P00010063 5.688082221
A_25_P00010070 13.36896425
A_25_P00010071 12.86589104
A_25_P00010072 12.58193764
A_25_P00010073 10.83247245
A_25_P00010078 8.247070803
A_25_P00010079 6.733083582

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071393_S-7.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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