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Sample GSM1071387 Query DataSets for GSM1071387
Status Public on Dec 31, 2013
Title SPN-1 [miRNA]
Sample type RNA
Source name solid-pseudopapillary neoplasm
Organism Homo sapiens
Characteristics gender: female
age: 59
tissue: Solid-pseudopapillary neoplasm of pancreas (SPN)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description S-1
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.668277102
A_25_P00010020 5.568911038
A_25_P00010021 5.642441665
A_25_P00010023 5.586840699
A_25_P00010041 5.648123039
A_25_P00010042 5.601657517
A_25_P00010043 5.540254932
A_25_P00010044 5.609721082
A_25_P00010047 7.440335605
A_25_P00010048 6.255127734
A_25_P00010053 14.01466501
A_25_P00010054 11.6425244
A_25_P00010062 5.636649139
A_25_P00010063 5.631028371
A_25_P00010070 13.07506566
A_25_P00010071 12.79184075
A_25_P00010072 12.16671158
A_25_P00010073 9.667287318
A_25_P00010078 7.418242957
A_25_P00010079 6.258849299

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071387_S-1.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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