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Sample GSM107071 Query DataSets for GSM107071
Status Public on Aug 11, 2006
Title 57_5dPA_MK02X024
Sample type RNA
Source name amputation blastema-proximal (1mm) tissue from Xenopus laevis hindlimbs
Organism Xenopus laevis
Characteristics Stage 57 Xenopus leavis hindlimbs, 5 day post-amputation
Extracted molecule total RNA
Label biotin
Description Gene expression data from Hindlimbs at either st57 were amputated unilaterally or bilaterally at the mid-zeugopodia level. Five days (5dPA) after amputation tissues were collected 1mm proximal to the original level of amputation. Total RNA was isolated using RNaqueous micro kit (Ambion, inc.).
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
Submission date Apr 28, 2006
Last update date Aug 10, 2006
Contact name Matthew Grow
Organization name Indiana University
Department Biochemistry and Molecular Biology
Lab Center for Medical Genomics
Street address 1345 W 16th St
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
Platform ID GPL1318
Series (1)
GSE4738 Global analysis of gene expression in Xenopus hindlimbs during stage-dependent complete and incomplete regeneration

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 692.9 P 0.000754
AFFX-BioB-M_at 906.2 P 0.00034
AFFX-BioB-3_at 584.1 P 0.000052
AFFX-BioC-5_at 1857.2 P 0.00007
AFFX-BioC-3_at 2171.5 P 0.000052
AFFX-BioDn-5_at 4077.9 P 0.000044
AFFX-BioDn-3_at 5965 P 0.00006
AFFX-CreX-5_at 18336.7 P 0.000044
AFFX-CreX-3_at 23415.7 P 0.000052
AFFX-DapX-5_at 42.3 A 0.52976
AFFX-DapX-M_at 117.8 A 0.139482
AFFX-DapX-3_at 279.4 P 0.010317
AFFX-LysX-5_at 7.7 A 0.574038
AFFX-LysX-M_at 69.7 A 0.455413
AFFX-LysX-3_at 278 P 0.001593
AFFX-PheX-5_at 7.5 A 0.904333
AFFX-PheX-M_at 12.1 A 0.737173
AFFX-PheX-3_at 106.1 M 0.054213
AFFX-ThrX-5_at 9.6 A 0.941556
AFFX-ThrX-M_at 40.1 A 0.58862

Total number of rows: 15611

Table truncated, full table size 509 Kbytes.

Supplementary data files not provided

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