|Public on Jan 24, 2013
|genomic DNA from superior temporal gyrus_6042316061_R05C02_Cohort 1D
source tissue: superior temporal gyrus
|Genomic DNA was extracted and purified from post-mortem brain or blood samples using phenol-chloroform protocol according to standard instructions
|Cy5 and Cy3
|Standard Illumina Protocol
|Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|Arrays were imaged using HiScan using standard recommended Illumina scanner setting
|GenomeStudio software v2011.1 used to generate the raw intensity file (unmethylated and methylated signal intensities).
Data used in the development of the R wateRmelon package for analysis of Illumina Infinium450 Human Methylation data.
The GenomeStudio v2011.1-computed Average Betas (normalized) is betaqn_geo_all cohorts.csv.
Thirteen other wateRmelon-generated normalized beta matrices include:
|Jan 24, 2013
|Last update date
|Jul 23, 2014
|King's College London
|MRC SGDP Centre, Institute of Psychiatry,
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|A data-driven approach to preprocessing Illumina 450K methylation array data