|
| Status |
Public on Jan 24, 2013 |
| Title |
genomic DNA from cerebellum_6057825018_R01C02_Cohort 1Ai |
| Sample type |
genomic |
| |
|
| Source name |
6057825018_R01C02_Cohort 1Ai
|
| Organism |
Homo sapiens |
| Characteristics |
subjectid: 3
barcode: 6057825018_R01C02
lunnonetal: TRUE
tissue_code: H
braak.stage: Exclude
Sex: MALE
ad.disease.status: AD
age.brain: 89
age.blood: 89
source tissue: cerebellum
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted and purified from post-mortem brain or blood samples using phenol-chloroform protocol according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using HiScan using standard recommended Illumina scanner setting
|
| Data processing |
GenomeStudio software v2011.1 used to generate the raw intensity file (unmethylated and methylated signal intensities).
Data used in the development of the R wateRmelon package for analysis of Illumina Infinium450 Human Methylation data.
The GenomeStudio v2011.1-computed Average Betas (normalized) is betaqn_geo_all cohorts.csv.
Thirteen other wateRmelon-generated normalized beta matrices include:
danen_geo_all cohorts.csv
danes_geo_all cohorts.csv
danet_geo_all cohorts.csv
daten1_geo_all cohorts.csv
daten2_geo_all cohorts.csv
fuks_geo_all cohorts.csv
nanes_geo_all cohorts.csv
nanet_geo_all cohorts.csv
nasen_geo_all cohorts.csv
naten_geo_all cohorts.csv
swan_geo_all cohorts.csv
tost_geo_all cohorts.csv
dasen_geo_all cohorts.csv
|
| |
|
| Submission date |
Jan 24, 2013 |
| Last update date |
Jul 23, 2014 |
| Contact name |
Chloe Wong |
| E-mail(s) |
chloe.wong@kcl.ac.uk
|
| Organization name |
King's College London
|
| Street address |
MRC SGDP Centre, Institute of Psychiatry,
|
| City |
London |
| State/province |
Select a State or Province |
| ZIP/Postal code |
SE5 8AF |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE43414 |
A data-driven approach to preprocessing Illumina 450K methylation array data |
|
| Relations |
| Reanalyzed by |
GSM1443261 |
