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Sample GSM1064 Query DataSets for GSM1064
Status Public on Feb 12, 2002
Title 1.5 mM diamide (90 min)
Sample type RNA
 
Channel 1
Source name time = 0 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 90 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-95
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL53
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 119 99 563 333 291 49 42 35 244 279 .695 0 -1.207 .487 81 73 1.935 2.308 .517 .433 .41 990 225 103 120 136 153 -1.207
2 192 100 120 133 93 132 40 34 78 111 .771 0 -.623 .549 48 45 1.29 1.54 .775 .65 .6 720 225 103 120 153 170 -.623
3 285 100 2311 2933 2890 390 43 36 2422 2458 .918 0 .068 1.22 81 85 .8 .954 1.251 1.048 1.132 720 225 103 120 171 188 .068
4 219 98 155 278 236 319 42 35 198 233 .879 0 .352 1.065 37 53 .657 .784 1.523 1.276 1.322 720 225 103 120 188 205 .352
5 129 94 840 1097 1054 100 43 36 883 919 .925 0 .073 1.227 76 73 .797 .951 1.255 1.052 1.131 746 225 103 120 206 223 .073
6 155 93 66 116 72 158 44 37 60 97 .815 0 -.129 .931 32 40 .917 1.094 1.091 .914 .769 720 225 103 120 224 241 -.129
7 153 89 38 139 42 35 -3 32 -.008 0 .25 21 12 -.003 720 225 103 120 241 258
8 135 89 9 42 2 95 40 34 2 35 .63 0 -2.425 .544 24 20 4.5 5.369 .222 .186 .447 720 225 103 120 259 276 -2.425
9 136 98 43 1 87 42 35 1 36 -.009 0 .367 15 15 -.007 720 225 103 120 276 293
10 218 98 41 188 45 38 -3 34 -.031 0 .322 14 11 -.016 746 225 103 120 294 311
11 210 87 3 41 202 42 35 -1 34 -.004 0 .4 22 14 -.002 720 225 103 120 312 329
12 260 89 42 310 44 37 -2 35 .251 0 .308 14 12 .098 720 225 103 120 329 346
13 303 97 13 51 6 345 45 38 5 43 .089 0 -1.37 .313 24 22 2.167 2.585 .462 .387 .03 720 225 103 120 347 364 -1.37
14 171 91 28 49 6 132 43 36 5 41 .314 0 -2.477 .331 26 24 4.667 5.568 .214 .18 .073 720 225 103 120 364 381 -2.477
15 157 88 6 42 121 45 38 -3 35 .026 0 .526 22 15 .011 746 225 103 120 382 399
16 143 87 5 44 110 45 38 -1 37 -.025 0 .543 17 16 -.01 720 225 103 120 400 417
17 116 87 2 46 3 82 43 36 3 39 .16 0 .33 .467 25 17 .667 .795 1.5 1.257 .125 720 225 103 120 417 434 .33
18 115 91 8 49 6 69 43 36 5 41 .142 0 -.67 .504 25 21 1.333 1.591 .75 .629 .053 720 225 103 120 435 452 -.67
19 110 88 25 54 11 72 43 36 9 45 .373 0 -1.439 .45 33 28 2.273 2.712 .44 .369 .157 720 225 103 120 452 469 -1.439
20 126 82 5 43 1 123 42 35 1 36 .004 0 -2.577 .403 24 18 5 5.966 .2 .168 .002 746 225 103 120 470 487 -2.577

Total number of rows: 8832

Table truncated, full table size 1048 Kbytes.




Supplementary data files not provided
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