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Sample GSM1058 Query DataSets for GSM1058
Status Public on Feb 12, 2002
Title 1.5 mM diamide (20 min)
Sample type RNA
 
Channel 1
Source name time = 0 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 20 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-90
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL53
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 100 92 634 446 386 63 60 63 402 465 .836 0 -.657 .617 90 83 1.642 1.577 .609 .634 .613 990 225 95 112 136 153 -.657
2 107 92 111 200 136 91 64 67 141 208 .963 0 .345 .98 25 22 .816 .787 1.225 1.27 1.1 720 225 95 112 153 170 .345
3 100 85 3205 3707 3648 106 59 61 3800 3861 .918 0 .246 1.136 96 95 .879 .843 1.138 1.186 .965 720 225 95 112 171 188 .246
4 91 83 106 180 121 95 59 61 127 188 .909 0 .261 .947 32 30 .876 .835 1.142 1.198 .998 720 225 95 112 188 205 .261
5 86 81 1145 1451 1393 79 58 60 1451 1511 .938 0 .342 1.251 85 88 .822 .789 1.217 1.267 1.118 746 225 95 112 206 223 .342
6 84 80 33 107 49 65 58 60 51 111 .886 0 .628 1 23 25 .673 .647 1.485 1.545 1.244 720 225 95 112 224 241 .628
7 83 77 58 62 58 60 60 -.062 0 .79 12 12 -.044 720 225 95 112 241 258
8 83 76 4 61 4 62 57 59 5 64 -.013 0 .322 .646 17 17 1 .8 1 1.25 -.009 720 225 95 112 259 276 .322
9 87 77 58 67 60 63 60 .112 0 .655 17 14 .076 703 225 95 112 276 293
10 127 80 57 104 60 63 59 .11 0 .8 15 12 .081 729 225 95 112 294 311
11 142 87 56 134 63 66 58 .109 0 .565 13 6 .069 744 225 95 112 312 329
12 132 84 58 110 63 66 60 .098 0 .524 11 10 .066 743 225 95 112 329 346
13 121 80 3 60 80 62 65 63 -.043 0 .644 18 10 -.026 714 225 95 112 347 364
14 82 76 8 59 1 64 58 60 1 61 .07 0 -3 .773 24 13 8 8 .125 .125 .043 703 225 95 112 364 381 -3
15 84 78 6 59 77 61 64 61 .247 0 .611 18 12 .154 736 225 95 112 382 399
16 87 80 4 54 75 58 60 56 .055 0 .481 18 8 .033 723 225 95 112 400 417
17 93 84 60 1 69 59 61 2 63 .111 0 .674 14 12 .07 743 225 95 112 417 434
18 94 84 25 86 27 68 59 61 29 90 .329 0 .214 .817 31 42 .926 .862 1.08 1.16 .211 744 225 95 112 435 452 .214
19 87 79 2 57 61 57 59 59 .122 0 .5 21 12 .076 720 225 95 112 452 469
20 87 75 57 2 62 55 57 2 59 -.027 0 .542 14 14 -.018 746 225 95 112 470 487

Total number of rows: 8832

Table truncated, full table size 1038 Kbytes.




Supplementary data files not provided
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