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Sample GSM1057 Query DataSets for GSM1057
Status Public on Feb 12, 2002
Title 1.5 mM diamide (10 min)
Sample type RNA
 
Channel 1
Source name time = 0 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 5min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13-89
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL53
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 151 144 872 801 706 100 95 69 515 584 .744 0 -.761 .791 94 85 1.235 1.695 .81 .59 .71 990 225 99 116 129 146 -.761
2 146 134 119 294 205 125 89 65 149 214 .934 0 .328 1.444 39 54 .58 .796 1.723 1.256 1.562 756 225 98 115 146 163 .328
3 138 128 2830 4470 4382 126 88 64 3194 3258 0 0 .175 1.535 90 92 .646 .886 1.548 1.129 0 756 225 98 115 164 181 .175
4 134 128 103 280 196 105 84 61 143 204 .933 0 .472 1.367 23 36 .526 .721 1.903 1.387 1.633 756 225 98 115 181 198 .472
5 129 123 1013 1709 1626 102 83 60 1185 1246 .928 0 .226 1.589 82 87 .623 .855 1.605 1.17 1.456 809 225 98 115 199 216 .226
6 122 115 53 196 115 89 81 59 84 143 .889 0 .661 1.508 24 37 .461 .632 2.17 1.582 1.539 809 225 98 115 218 235 .661
7 120 113 7 82 2 82 80 58 1 60 -.137 0 -2.264 .647 14 10 3.5 4.802 .286 .208 -.083 745 225 98 115 236 253 -2.264
8 121 116 1 85 5 83 80 58 4 62 -.002 0 1.866 .857 9 11 .2 .274 5 3.645 -.001 731 225 98 115 253 270 1.866
9 123 117 6 80 84 81 59 -1 58 -.078 0 .475 12 9 -.05 720 225 98 115 271 288
10 125 116 6 82 92 82 60 0 60 .099 0 .61 13 8 .064 720 225 98 115 288 305
11 126 117 9 83 1 94 82 60 1 60 -.038 0 -3.626 .5 16 11 9 12.347 .111 .081 -.026 731 225 98 115 306 323 -3.626
12 126 119 82 1 87 81 59 1 60 .046 0 .643 8 8 .029 720 225 98 115 323 340
13 128 121 82 87 82 60 0 60 -.071 0 .94 8 9 -.041 771 225 97 114 341 358
14 127 121 10 81 85 81 59 0 59 .149 0 .677 16 6 .077 738 215 97 114 359 376
15 122 118 5 89 8 83 81 59 6 65 .023 0 .222 .677 13 14 .625 .857 1.6 1.166 .016 724 225 97 114 374 391 .222
16 137 118 2 84 2 106 82 60 1 61 .071 0 -.456 .556 12 7 1 1.372 1 .729 .043 766 225 97 114 392 409 -.456
17 171 121 81 155 83 60 -1 59 .075 0 .544 11 8 .05 756 225 97 114 410 427
18 157 118 84 2 138 82 60 1 61 .099 0 .591 11 10 .059 756 225 97 114 427 444
19 127 116 82 1 97 81 59 1 60 .099 0 1 9 8 .064 745 225 97 114 445 462
20 139 115 82 2 139 80 58 1 60 .098 0 .689 10 12 .065 731 225 97 114 462 479

Total number of rows: 8832

Table truncated, full table size 1053 Kbytes.




Supplementary data files not provided
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