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Sample GSM1027 Query DataSets for GSM1027
Status Public on Feb 12, 2002
Title Heat Shock 000 minutes (series 2)
Sample type RNA
 
Channel 1
Source name Reference Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Heat Shock 000 minutes
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n021
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL53
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 62 57 129 101 73 32 28 30 80 110 .867 0 -.689 .558 67 65 1.767 1.613 .566 .62 .586 1011 208 69 85 54 70
2 97 59 20 42 13 95 29 32 14 46 .786 0 -.515 .732 21 26 1.538 1.429 .65 .7 .487 789 208 68 84 71 87
3 127 57 131 144 115 117 29 32 125 157 .885 0 -.068 .91 69 73 1.139 1.048 .878 .954 .737 788 208 68 84 89 105
4 95 55 22 48 20 55 28 30 22 52 .878 0 0 .813 22 25 1.1 1 .909 1 .707 765 208 68 84 106 122
5 60 55 87 100 73 32 27 29 80 109 .847 0 -.121 .799 66 72 1.192 1.088 .839 .92 .674 815 208 67 83 124 140
6 101 57 8 37 8 106 29 32 8 40 .83 0 0 .8 14 14 1 1 1 1 .72 802 208 67 83 142 158
7 100 56 26 107 27 29 28 .167 0 .632 5 8 .106 775 208 67 83 159 175
8 65 55 26 39 27 29 28 .24 0 .571 4 10 .141 815 208 66 82 177 193
9 64 54 2 28 39 28 30 30 .145 0 .444 12 8 .084 802 208 66 82 195 211
10 58 55 3 31 2 37 29 32 2 34 .098 0 -.585 .7 10 15 1.5 1.5 .667 .667 .067 775 208 66 82 212 228
11 66 57 30 1 54 29 32 1 33 .14 0 .5 7 11 .076 781 208 66 82 230 246
12 74 59 2 30 79 32 35 33 .193 0 .539 8 5 .111 802 208 65 81 248 264
13 87 59 30 145 33 36 33 .098 0 .667 8 6 .057 789 208 65 81 265 281
14 80 59 29 120 32 35 32 0 0 .5 4 4 0 788 208 65 81 283 299
15 62 57 26 44 29 32 28 .11 0 .667 4 5 .066 799 208 64 80 300 316
16 65 57 30 50 30 33 33 .227 0 .792 5 9 .159 805 208 64 80 318 334
17 67 57 29 49 30 33 32 -.041 0 .4 6 6 -.024 788 208 64 80 336 352
18 63 56 28 41 30 33 30 .003 0 1 5 6 .002 765 208 64 80 353 369
19 77 57 1 30 48 30 33 33 .202 0 .55 9 10 .125 815 208 63 79 371 387
20 122 60 28 93 30 33 30 .041 0 .4 7 5 .024 802 208 63 79 389 405

Total number of rows: 8832

Table truncated, full table size 949 Kbytes.




Supplementary data files not provided
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